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The map label for this gene is yjbM [H]

Identifier: 222150870

GI number: 222150870

Start: 663433

End: 663939

Strand: Direct

Name: yjbM [H]

Synonym: MCCL_0620

Alternate gene names: 222150870

Gene position: 663433-663939 (Clockwise)

Preceding gene: 222150869

Following gene: 222150871

Centisome position: 31.56

GC content: 42.41

Gene sequence:

>507_bases
GTGACCGGACGCGTAAAGCCGGTACCAAGCATTATCGAGAAAGCGAATACGAGAGGAATCGCGTTTGATAAGCTCAGTGA
AGAGATGTATGATATTGCGGGTTTAAGGTTAATGTGCCAGTTCGTTGATGATATCGATGTTGTCGTTAATATGCTTAAAG
CAAGAAGTGACTTTGAAGTCGTTGAAGAGCGTGATTATATCAAAGATACGAAGGAAAGCGGATATCGCTCGTATCATGTC
ATCATCAAGTATCCGATAGAAACGTTATCGGGCCAGAAGTTTATTCTTGCAGAAATTCAGATTCGTACACTTGCCATGAA
TTTCTGGGCAACGATTGAACATACGCTGCGCTATAAGTATAGTGGTGACTATCCACCGGAAATCAGAACGAGACTAGAAC
GTGCGGCTGAAGCTGCATTTCTGCTGGATGAAGAGATGTCTGAAATTCGTGAAGAAATACAGGAAGCACAAAAATATTAT
AGCGAGCAACGCAGCGAAAAACGCTAA

Upstream 100 bases:

>100_bases
CTTGTCGCCGTATCATCAGGCGGTTGAGGAACTTAAAGTGAAGCTTTAAGGCATAAGGAAACAGTTTATTAATGAAGGTA
AATCATCACCAATTGAATTT

Downstream 100 bases:

>100_bases
GAGGTGAAGTGATGAGATATGCAATATTGACTAAAGGTGACTCTAAAAGTAATGCTTTAAAGCAGAAGATGGTCAGTTAT
ATGAATGACTTCAATATGAC

Product: GTP pyrophosphokinase

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTGRVKPVPSIIEKANTRGIAFDKLSEEMYDIAGLRLMCQFVDDIDVVVNMLKARSDFEVVEERDYIKDTKESGYRSYHV
IIKYPIETLSGQKFILAEIQIRTLAMNFWATIEHTLRYKYSGDYPPEIRTRLERAAEAAFLLDEEMSEIREEIQEAQKYY
SEQRSEKR

Sequences:

>Translated_168_residues
MTGRVKPVPSIIEKANTRGIAFDKLSEEMYDIAGLRLMCQFVDDIDVVVNMLKARSDFEVVEERDYIKDTKESGYRSYHV
IIKYPIETLSGQKFILAEIQIRTLAMNFWATIEHTLRYKYSGDYPPEIRTRLERAAEAAFLLDEEMSEIREEIQEAQKYY
SEQRSEKR
>Mature_167_residues
TGRVKPVPSIIEKANTRGIAFDKLSEEMYDIAGLRLMCQFVDDIDVVVNMLKARSDFEVVEERDYIKDTKESGYRSYHVI
IKYPIETLSGQKFILAEIQIRTLAMNFWATIEHTLRYKYSGDYPPEIRTRLERAAEAAFLLDEEMSEIREEIQEAQKYYS
EQRSEKR

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 19762; Mature: 19631

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRVKPVPSIIEKANTRGIAFDKLSEEMYDIAGLRLMCQFVDDIDVVVNMLKARSDFEV
CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VEERDYIKDTKESGYRSYHVIIKYPIETLSGQKFILAEIQIRTLAMNFWATIEHTLRYKY
HHHHHHHHHHHHCCCCEEEEEEEECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEE
SGDYPPEIRTRLERAAEAAFLLDEEMSEIREEIQEAQKYYSEQRSEKR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TGRVKPVPSIIEKANTRGIAFDKLSEEMYDIAGLRLMCQFVDDIDVVVNMLKARSDFEV
CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VEERDYIKDTKESGYRSYHVIIKYPIETLSGQKFILAEIQIRTLAMNFWATIEHTLRYKY
HHHHHHHHHHHHCCCCEEEEEEEECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEE
SGDYPPEIRTRLERAAEAAFLLDEEMSEIREEIQEAQKYYSEQRSEKR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]