Definition Macrococcus caseolyticus JCSC5402, complete genome.
Accession NC_011999
Length 2,102,324

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The map label for this gene is dltD [H]

Identifier: 222150812

GI number: 222150812

Start: 599802

End: 600956

Strand: Direct

Name: dltD [H]

Synonym: MCCL_0562

Alternate gene names: 222150812

Gene position: 599802-600956 (Clockwise)

Preceding gene: 222150811

Following gene: 222150813

Centisome position: 28.53

GC content: 33.42

Gene sequence:

>1155_bases
ATGATTAAAAAGTTCTTACCGGCAATAATTGCCATCAGTCTATTTATAGTTTTTTTAGCCATGCCATCTGACTATATAAA
AAGATATATTCCTTTTAAGACAGTAACCGGTGATGGTGTCAATTTAAATGAAATAACATTTAAAGGAAGTGCGATTCAGA
CAGAGATGTTCGAAGACAAAAAATTCTATCCGATATTTGGTTCAAGTGAACTTGAGAAAAGAGATCCCTTTCATCCGACG
CACATATTCAAGGAGAAGAAATTCGGTAAAATCCCTTTTCTTATTGGTACAGGTGGATCCACTGACCTAATTCACGCCAT
TAATATTGGGAGTCATATTGGACATATCGAGAACAAAAAGTTTGCAATTATCATTTCACCGCAATGGTTTACAAAAAAAG
GACTGGAAGATAACAATTTTTCTGCACGATATTCTCAATTGCAATTAGACAAACTATTGAGTAATCCAAATATATCTCCA
GGCTTAAAGCATAGGATAAGTAAGAGGTTAATGCATTTTTCTGCGACTAAGGATGATGCACAAGTCAATGTGTATGCAAA
TAATGAAGCGGATGATAGCGAAGTTTCAGGAGGAATCTATGAAAACCTTATGGAGAAAAATGATATTGTTAAATCAAAGT
TCATGATACCTGGAAATCGATTTAAAAAAAGAAAGCACCTTGACCTAGAACATAAATCCTGGGAAGAAATCAGAGATTTA
GCAGTGAAATTTGGAAGTAGGCATGCAACTAACAATCCATATTTTATGAGAAATGAATATTTTGATATGATACAAAAACA
TCAAAAAAAATTATATCGAAATGGTGAATTTTATATCAACTCTCAAGAATTTAATGATCTACAATTATTGCTTGATATTT
TAAAAGAGAGCAAATCAGACCCGATATTTATCTCAATTCCTGCAAATGGAAAATGGTATGATCATATCAATATTCCGCAA
TCACAAAGACAGCCAGTATATGATAAAATCAACAAGAAAATCGCTTCAGCTGGTTTTAAACTCTATGATTTAAGTGATAA
GGAGTACGAACCATATGTATTAAGCGACGCAGTACATATCGGCTGGAAAGGGTGGGCATATATAGATGAACAGATGGATA
ATCACATTCATCATCGTCCGATAACAACCCCATAA

Upstream 100 bases:

>100_bases
CATTAAATGATCGATTAGATATGGACCTTACAATCACTGACTTTGATCGTGATGAATGGGCGACACCAAACATGATTGCA
GAAGTGTTAGAAGAATTAAG

Downstream 100 bases:

>100_bases
GTAAACCGATAAAAATAAAATCCCAAATCAACATCGTTGATTTGGGATTTTATTAAAATACTTGTTCAACTTCAACCACG
CCTGGCACTTCTTCAAGTAA

Product: poly glycerophosphate chain D-alanine transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MIKKFLPAIIAISLFIVFLAMPSDYIKRYIPFKTVTGDGVNLNEITFKGSAIQTEMFEDKKFYPIFGSSELEKRDPFHPT
HIFKEKKFGKIPFLIGTGGSTDLIHAINIGSHIGHIENKKFAIIISPQWFTKKGLEDNNFSARYSQLQLDKLLSNPNISP
GLKHRISKRLMHFSATKDDAQVNVYANNEADDSEVSGGIYENLMEKNDIVKSKFMIPGNRFKKRKHLDLEHKSWEEIRDL
AVKFGSRHATNNPYFMRNEYFDMIQKHQKKLYRNGEFYINSQEFNDLQLLLDILKESKSDPIFISIPANGKWYDHINIPQ
SQRQPVYDKINKKIASAGFKLYDLSDKEYEPYVLSDAVHIGWKGWAYIDEQMDNHIHHRPITTP

Sequences:

>Translated_384_residues
MIKKFLPAIIAISLFIVFLAMPSDYIKRYIPFKTVTGDGVNLNEITFKGSAIQTEMFEDKKFYPIFGSSELEKRDPFHPT
HIFKEKKFGKIPFLIGTGGSTDLIHAINIGSHIGHIENKKFAIIISPQWFTKKGLEDNNFSARYSQLQLDKLLSNPNISP
GLKHRISKRLMHFSATKDDAQVNVYANNEADDSEVSGGIYENLMEKNDIVKSKFMIPGNRFKKRKHLDLEHKSWEEIRDL
AVKFGSRHATNNPYFMRNEYFDMIQKHQKKLYRNGEFYINSQEFNDLQLLLDILKESKSDPIFISIPANGKWYDHINIPQ
SQRQPVYDKINKKIASAGFKLYDLSDKEYEPYVLSDAVHIGWKGWAYIDEQMDNHIHHRPITTP
>Mature_384_residues
MIKKFLPAIIAISLFIVFLAMPSDYIKRYIPFKTVTGDGVNLNEITFKGSAIQTEMFEDKKFYPIFGSSELEKRDPFHPT
HIFKEKKFGKIPFLIGTGGSTDLIHAINIGSHIGHIENKKFAIIISPQWFTKKGLEDNNFSARYSQLQLDKLLSNPNISP
GLKHRISKRLMHFSATKDDAQVNVYANNEADDSEVSGGIYENLMEKNDIVKSKFMIPGNRFKKRKHLDLEHKSWEEIRDL
AVKFGSRHATNNPYFMRNEYFDMIQKHQKKLYRNGEFYINSQEFNDLQLLLDILKESKSDPIFISIPANGKWYDHINIPQ
SQRQPVYDKINKKIASAGFKLYDLSDKEYEPYVLSDAVHIGWKGWAYIDEQMDNHIHHRPITTP

Specific function: Could be responsible for the transfer of D-alanine residues from D-Ala-undecaprenol phosphate to the poly(glycerophosphate) chains [H]

COG id: COG3966

COG function: function code M; Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006998
- InterPro:   IPR007002
- InterPro:   IPR006999
- InterPro:   IPR013830 [H]

Pfam domain/function: PF04914 DltD_C; PF04918 DltD_M; PF04915 DltD_N [H]

EC number: NA

Molecular weight: Translated: 44567; Mature: 44567

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKFLPAIIAISLFIVFLAMPSDYIKRYIPFKTVTGDGVNLNEITFKGSAIQTEMFEDK
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCCCCEEEECCCCEEHHHHCCC
KFYPIFGSSELEKRDPFHPTHIFKEKKFGKIPFLIGTGGSTDLIHAINIGSHIGHIENKK
CEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCE
FAIIISPQWFTKKGLEDNNFSARYSQLQLDKLLSNPNISPGLKHRISKRLMHFSATKDDA
EEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
QVNVYANNEADDSEVSGGIYENLMEKNDIVKSKFMIPGNRFKKRKHLDLEHKSWEEIRDL
EEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCCCCCHHHHHHHH
AVKFGSRHATNNPYFMRNEYFDMIQKHQKKLYRNGEFYINSQEFNDLQLLLDILKESKSD
HHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCC
PIFISIPANGKWYDHINIPQSQRQPVYDKINKKIASAGFKLYDLSDKEYEPYVLSDAVHI
CEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEECEEEE
GWKGWAYIDEQMDNHIHHRPITTP
CCCCEEEEHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIKKFLPAIIAISLFIVFLAMPSDYIKRYIPFKTVTGDGVNLNEITFKGSAIQTEMFEDK
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCCCCEEEECCCCEEHHHHCCC
KFYPIFGSSELEKRDPFHPTHIFKEKKFGKIPFLIGTGGSTDLIHAINIGSHIGHIENKK
CEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCE
FAIIISPQWFTKKGLEDNNFSARYSQLQLDKLLSNPNISPGLKHRISKRLMHFSATKDDA
EEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
QVNVYANNEADDSEVSGGIYENLMEKNDIVKSKFMIPGNRFKKRKHLDLEHKSWEEIRDL
EEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCCCCCHHHHHHHH
AVKFGSRHATNNPYFMRNEYFDMIQKHQKKLYRNGEFYINSQEFNDLQLLLDILKESKSD
HHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCC
PIFISIPANGKWYDHINIPQSQRQPVYDKINKKIASAGFKLYDLSDKEYEPYVLSDAVHI
CEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEECEEEE
GWKGWAYIDEQMDNHIHHRPITTP
CCCCEEEEHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 7797557 [H]