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The map label for this gene is ycfH [C]

Identifier: 222150676

GI number: 222150676

Start: 451861

End: 452592

Strand: Direct

Name: ycfH [C]

Synonym: MCCL_0426

Alternate gene names: 222150676

Gene position: 451861-452592 (Clockwise)

Preceding gene: 222150673

Following gene: 222150677

Centisome position: 21.49

GC content: 38.25

Gene sequence:

>732_bases
ATGATAGATGCACATATTCATATCAATCAGTATAGCGATAAAGATATTCAAGATATCATGGCGCAAAACATACAATGTAT
TGCCGTTGCAACAGACTTGAAGAGTTGCTATCGACTGCTTGCACTTAAGAATGAAAATACACACATTGCTTTAGGGTATC
ATCCTGAGCAGCTTATTGATAAGAATGAGGTAGAAGAAATTCTTCGTTTAATCGATACACATCATCATGAGATTGTGGCA
ATCGGTGAAGTGGGCTTGCCGCATTATCTAATGCGTCAGGATCAATCGATAAAATTGCAACCGTATATTGATATATTAGA
AGCATTCATGCATAAAGCGAGAGCCTACCAACTCCCTGTCATCGTTCATGCTGTTTATGATGATGCAAGGATAGTGATGG
AACTCTTAAGAGAATATCAAATTCAAAAAGCGCATTTTCATTGGTTCAAAGCAGATAAAGAAGTATTCGAAGAGGTTTTA
AATAGTGATTACATGGTCAGTGTAACGCCTGATATTCTATGGAATGTCAAGACCAGAAGAGTAGCCCAGGCTTTCCCGCT
TCATCGACTCATGATAGAAACAGATGGTCCGTGGCCGCACGAAGGGTTTGAAGCAAAAGAGATTAAAACGCAACTTTCTG
CTATAATAAAGGAGCTGGAGCTGTTTTATCCGAAGGCAGAAAACATAGAATCTATTATGACGTATAACACGAAAGCTTTC
TATCGAATTTAA

Upstream 100 bases:

>100_bases
ACTCCTCCTTAAAATGATAGTAATAGTTAGCTATTCCTTTTATGTGACCTATTAAAACATTGCGTACAATTTATGTTAAA
ATCAAAATGAGGTGTTTAAG

Downstream 100 bases:

>100_bases
GATTGAGGATATAATATGAAAATAGATGATTACAGATTACTTGTAGCTTTGGATGAGGAAGAGACGCTTCGTAAAGCTGC
TGAAACCTTATATATTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIDAHIHINQYSDKDIQDIMAQNIQCIAVATDLKSCYRLLALKNENTHIALGYHPEQLIDKNEVEEILRLIDTHHHEIVA
IGEVGLPHYLMRQDQSIKLQPYIDILEAFMHKARAYQLPVIVHAVYDDARIVMELLREYQIQKAHFHWFKADKEVFEEVL
NSDYMVSVTPDILWNVKTRRVAQAFPLHRLMIETDGPWPHEGFEAKEIKTQLSAIIKELELFYPKAENIESIMTYNTKAF
YRI

Sequences:

>Translated_243_residues
MIDAHIHINQYSDKDIQDIMAQNIQCIAVATDLKSCYRLLALKNENTHIALGYHPEQLIDKNEVEEILRLIDTHHHEIVA
IGEVGLPHYLMRQDQSIKLQPYIDILEAFMHKARAYQLPVIVHAVYDDARIVMELLREYQIQKAHFHWFKADKEVFEEVL
NSDYMVSVTPDILWNVKTRRVAQAFPLHRLMIETDGPWPHEGFEAKEIKTQLSAIIKELELFYPKAENIESIMTYNTKAF
YRI
>Mature_243_residues
MIDAHIHINQYSDKDIQDIMAQNIQCIAVATDLKSCYRLLALKNENTHIALGYHPEQLIDKNEVEEILRLIDTHHHEIVA
IGEVGLPHYLMRQDQSIKLQPYIDILEAFMHKARAYQLPVIVHAVYDDARIVMELLREYQIQKAHFHWFKADKEVFEEVL
NSDYMVSVTPDILWNVKTRRVAQAFPLHRLMIETDGPWPHEGFEAKEIKTQLSAIIKELELFYPKAENIESIMTYNTKAF
YRI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI1787342, Length=268, Percent_Identity=27.2388059701493, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28536; Mature: 28536

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDAHIHINQYSDKDIQDIMAQNIQCIAVATDLKSCYRLLALKNENTHIALGYHPEQLID
CCEEEEEECCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCHHHHCC
KNEVEEILRLIDTHHHEIVAIGEVGLPHYLMRQDQSIKLQPYIDILEAFMHKARAYQLPV
HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCE
IVHAVYDDARIVMELLREYQIQKAHFHWFKADKEVFEEVLNSDYMVSVTPDILWNVKTRR
EEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCHHHH
VAQAFPLHRLMIETDGPWPHEGFEAKEIKTQLSAIIKELELFYPKAENIESIMTYNTKAF
HHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEE
YRI
EEC
>Mature Secondary Structure
MIDAHIHINQYSDKDIQDIMAQNIQCIAVATDLKSCYRLLALKNENTHIALGYHPEQLID
CCEEEEEECCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCHHHHCC
KNEVEEILRLIDTHHHEIVAIGEVGLPHYLMRQDQSIKLQPYIDILEAFMHKARAYQLPV
HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCE
IVHAVYDDARIVMELLREYQIQKAHFHWFKADKEVFEEVLNSDYMVSVTPDILWNVKTRR
EEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCHHHH
VAQAFPLHRLMIETDGPWPHEGFEAKEIKTQLSAIIKELELFYPKAENIESIMTYNTKAF
HHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEE
YRI
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]