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The map label for this gene is amyD [H]

Identifier: 222150604

GI number: 222150604

Start: 371389

End: 372255

Strand: Direct

Name: amyD [H]

Synonym: MCCL_0354

Alternate gene names: 222150604

Gene position: 371389-372255 (Clockwise)

Preceding gene: 222150603

Following gene: 222150605

Centisome position: 17.67

GC content: 34.6

Gene sequence:

>867_bases
ATGAAGACGAAAAGTTTAGCTTTCTGGTTATTTTTATTACCGGTTTTAGTAGCTTTATTTATGGTAATTATTATTCCGTT
TATTTACGGTATTTACTATTCATTTACCAATTGGAATGGAGACATTAGTCAAACACCTGGATTTGTTGGGTTTCAGAACT
ATGTAGATTTATTGAAGGACGATACATTTATCAATGCATTGATGTTTACATTTAAATATTCGATTGCAGCGATTTTCGTC
ATTAACTTTATCGGTTTAAGTTTAGCGTTAATTGTAACAAGTAAGATTAAATCAAAGAATTTACTAAGAACAGTATTTTT
CATGCCCAACTTAATCGGTGGATTAATTCTAGGGTTTATCTGGCAGTTTATCTTTACGAAAGTATTTGCAATGATCGGTG
AAGCAATCGGTTCTACTGCGTTGCAAGGTTGGTTAAGTGATACGCATACAGGTTTCTGGGGAATGGTCATCCTTTCAACA
TGGCAAATGGCAGGGTACATTATGATTATCTACATCGCATATTTAGAAAATGTACCAGATGATTTACTGGAAGCGGCAGA
AATTGATGGTGCGAATGCTTGGCAACGTTTCAAAAATATTACCTTCCCAATGGTAGCACCTGCATTTACAGTATGTATGT
TCTTAACGTTATCAGGTGCATTTAAAATTTATGATCAGAACTTATCTTTAACAAATGGTGGTCCAGGTAACTCAACGAAA
ATGTTAGCGATGGATATTGTAGATACAGCATTTAAGATGAATCACATGGGTGAAGCACAAGCGAAAGCGGTTGTATTCTT
CCTTATCGTAACAGTGATTAGTTTAACGCAAGTATACTATAACAAGAAACGTGAGGTGGAAATGTAA

Upstream 100 bases:

>100_bases
AATTAAAAAATCACAAGATGCTTGGGCAAAAGCACGTAAATAAAAACTTAAGGGAGAACGCTTCGGTGGTTCTCCCTTTT
TTAAACAAAGGAGTGAGCAT

Downstream 100 bases:

>100_bases
TGGCTAAAGTCAGAAGATGGGGACTCGAAATATTAGCAATTATTTTAGGAATAATTTGGTTATCACCATTTTACCTGATG
ATTGTAAATGCTTTTAAGAC

Product: multiple sugar-binding transporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKTKSLAFWLFLLPVLVALFMVIIIPFIYGIYYSFTNWNGDISQTPGFVGFQNYVDLLKDDTFINALMFTFKYSIAAIFV
INFIGLSLALIVTSKIKSKNLLRTVFFMPNLIGGLILGFIWQFIFTKVFAMIGEAIGSTALQGWLSDTHTGFWGMVILST
WQMAGYIMIIYIAYLENVPDDLLEAAEIDGANAWQRFKNITFPMVAPAFTVCMFLTLSGAFKIYDQNLSLTNGGPGNSTK
MLAMDIVDTAFKMNHMGEAQAKAVVFFLIVTVISLTQVYYNKKREVEM

Sequences:

>Translated_288_residues
MKTKSLAFWLFLLPVLVALFMVIIIPFIYGIYYSFTNWNGDISQTPGFVGFQNYVDLLKDDTFINALMFTFKYSIAAIFV
INFIGLSLALIVTSKIKSKNLLRTVFFMPNLIGGLILGFIWQFIFTKVFAMIGEAIGSTALQGWLSDTHTGFWGMVILST
WQMAGYIMIIYIAYLENVPDDLLEAAEIDGANAWQRFKNITFPMVAPAFTVCMFLTLSGAFKIYDQNLSLTNGGPGNSTK
MLAMDIVDTAFKMNHMGEAQAKAVVFFLIVTVISLTQVYYNKKREVEM
>Mature_288_residues
MKTKSLAFWLFLLPVLVALFMVIIIPFIYGIYYSFTNWNGDISQTPGFVGFQNYVDLLKDDTFINALMFTFKYSIAAIFV
INFIGLSLALIVTSKIKSKNLLRTVFFMPNLIGGLILGFIWQFIFTKVFAMIGEAIGSTALQGWLSDTHTGFWGMVILST
WQMAGYIMIIYIAYLENVPDDLLEAAEIDGANAWQRFKNITFPMVAPAFTVCMFLTLSGAFKIYDQNLSLTNGGPGNSTK
MLAMDIVDTAFKMNHMGEAQAKAVVFFLIVTVISLTQVYYNKKREVEM

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=250, Percent_Identity=28.4, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790465, Length=281, Percent_Identity=27.4021352313167, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789861, Length=281, Percent_Identity=24.9110320284698, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32428; Mature: 32428

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]