Click here to switch to the map view.

The map label for this gene is amyC [H]

Identifier: 222150605

GI number: 222150605

Start: 372255

End: 373067

Strand: Direct

Name: amyC [H]

Synonym: MCCL_0355

Alternate gene names: 222150605

Gene position: 372255-373067 (Clockwise)

Preceding gene: 222150604

Following gene: 222150606

Centisome position: 17.71

GC content: 32.96

Gene sequence:

>813_bases
ATGGCTAAAGTCAGAAGATGGGGACTCGAAATATTAGCAATTATTTTAGGAATAATTTGGTTATCACCATTTTACCTGAT
GATTGTAAATGCTTTTAAGACAAAGTTAGAAATTTTTGATAATACTTTAAAGCTTCCGGCAAACGTTACTTTCCAGAATT
TTAAAGATGCTTTTGAACAGTTATCGTTTTTACGTACATTCTTTAATTCAGTGCTTGTTTCAGTGATAGCAGTGACATTA
ATTATCATTTTCTCAAGTATGGCAGCATATGCTTTAAATCGTAATAAAAGTAAGGTTTCAGGTATCATATTCTTCTTATT
TGTTGCAGCGATGCTGATACCTTTCCAATCAGTAATGATTCCACTTGTTAAGATATTCGGTGATTTACAAAGCTTAAATA
TCAGTGGATTAATCTTTATGTACTTAGGTTTCGGTGCAAGTTTATCAATTTTCTTATATCACGGGGCATTACAAAGTATC
CCGAAATCACTAGATGAAGCAGCTATGATTGATGGTGCAAGTAAATGGCAGATTTTCTGGTATATCATCTTTCCGATGTT
AAAACCAATTTCAGTTACAGTAGGTATTTTAAATATTATTTGGATCTGGAATGACTACCTATTACCAAGTTTAGTATTAG
GTGCTGGTCAGGAAACGATTCCACTTAAATTATTCTTCTTCTTTGGACAGTATACGAAACAGTGGCACTTAGCTTTAGCA
GGATTAACATTATCTATTATACCGGTTGTTATTGGTTACTTCTTTGCACAAAAACACATTATTAAAGGTGTATCGGATGG
GGCTGTGAAATAG

Upstream 100 bases:

>100_bases
TGGGTGAAGCACAAGCGAAAGCGGTTGTATTCTTCCTTATCGTAACAGTGATTAGTTTAACGCAAGTATACTATAACAAG
AAACGTGAGGTGGAAATGTA

Downstream 100 bases:

>100_bases
TTGGTAACAATCAAGGATGTAGCTAAAAGAGCGAGTGTATCACCTTCAACTGTATCGCGTGTGATTAGTAACCATAGCGG
TATCAGTAGTGAGACAAAGA

Product: multiple sugar-binding transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAKVRRWGLEILAIILGIIWLSPFYLMIVNAFKTKLEIFDNTLKLPANVTFQNFKDAFEQLSFLRTFFNSVLVSVIAVTL
IIIFSSMAAYALNRNKSKVSGIIFFLFVAAMLIPFQSVMIPLVKIFGDLQSLNISGLIFMYLGFGASLSIFLYHGALQSI
PKSLDEAAMIDGASKWQIFWYIIFPMLKPISVTVGILNIIWIWNDYLLPSLVLGAGQETIPLKLFFFFGQYTKQWHLALA
GLTLSIIPVVIGYFFAQKHIIKGVSDGAVK

Sequences:

>Translated_270_residues
MAKVRRWGLEILAIILGIIWLSPFYLMIVNAFKTKLEIFDNTLKLPANVTFQNFKDAFEQLSFLRTFFNSVLVSVIAVTL
IIIFSSMAAYALNRNKSKVSGIIFFLFVAAMLIPFQSVMIPLVKIFGDLQSLNISGLIFMYLGFGASLSIFLYHGALQSI
PKSLDEAAMIDGASKWQIFWYIIFPMLKPISVTVGILNIIWIWNDYLLPSLVLGAGQETIPLKLFFFFGQYTKQWHLALA
GLTLSIIPVVIGYFFAQKHIIKGVSDGAVK
>Mature_269_residues
AKVRRWGLEILAIILGIIWLSPFYLMIVNAFKTKLEIFDNTLKLPANVTFQNFKDAFEQLSFLRTFFNSVLVSVIAVTLI
IIFSSMAAYALNRNKSKVSGIIFFLFVAAMLIPFQSVMIPLVKIFGDLQSLNISGLIFMYLGFGASLSIFLYHGALQSIP
KSLDEAAMIDGASKWQIFWYIIFPMLKPISVTVGILNIIWIWNDYLLPSLVLGAGQETIPLKLFFFFGQYTKQWHLALAG
LTLSIIPVVIGYFFAQKHIIKGVSDGAVK

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=258, Percent_Identity=28.2945736434109, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=25.8426966292135, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790464, Length=273, Percent_Identity=27.1062271062271, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30368; Mature: 30237

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVRRWGLEILAIILGIIWLSPFYLMIVNAFKTKLEIFDNTLKLPANVTFQNFKDAFEQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LSFLRTFFNSVLVSVIAVTLIIIFSSMAAYALNRNKSKVSGIIFFLFVAAMLIPFQSVMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PLVKIFGDLQSLNISGLIFMYLGFGASLSIFLYHGALQSIPKSLDEAAMIDGASKWQIFW
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YIIFPMLKPISVTVGILNIIWIWNDYLLPSLVLGAGQETIPLKLFFFFGQYTKQWHLALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
GLTLSIIPVVIGYFFAQKHIIKGVSDGAVK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKVRRWGLEILAIILGIIWLSPFYLMIVNAFKTKLEIFDNTLKLPANVTFQNFKDAFEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LSFLRTFFNSVLVSVIAVTLIIIFSSMAAYALNRNKSKVSGIIFFLFVAAMLIPFQSVMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PLVKIFGDLQSLNISGLIFMYLGFGASLSIFLYHGALQSIPKSLDEAAMIDGASKWQIFW
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YIIFPMLKPISVTVGILNIIWIWNDYLLPSLVLGAGQETIPLKLFFFFGQYTKQWHLALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
GLTLSIIPVVIGYFFAQKHIIKGVSDGAVK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]