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The map label for this gene is rbsR [H]

Identifier: 222150598

GI number: 222150598

Start: 365180

End: 366148

Strand: Direct

Name: rbsR [H]

Synonym: MCCL_0348

Alternate gene names: 222150598

Gene position: 365180-366148 (Clockwise)

Preceding gene: 222150597

Following gene: 222150599

Centisome position: 17.37

GC content: 44.07

Gene sequence:

>969_bases
ATGGCAACGATAAAAGATGTAGCGAAAGAAGCGGGTGTGTCCGTTGCTACGGTATCTAGAGCGATGAATAGCTCGGGGTA
TGTGCACGAGGATACCTTGAAGAAGATTAATAGAGCGATTGAGACTTTAAAGTATAAGCCTAATGAGACGGCACGTACGC
TGTATAAGAAACAGTCGAAGATTATCGGTTTATTGTTGCCGGATATCAGCAATCCGTTTTTCACTGTCGTGGCGCGTGGG
GTTGAGGATGCGGCGTTGGAGCGAGGGTTTCATGTTGTTATCGGTAACAGTGATCAGAATCGGGATAAGGAGCGTCAGTA
TATTGATACGTTCCGGCTACATAACTGTGTCGGTTTAATTTCTTCTGCGCTCGTATGGGAAGATGCGTTACAGTATATTC
AATCTTCACAGATGCTGCATGTGATGTTAGACCGTATCGGTGAGACAGAGTATTCTGTTGAAGCGGATCATTATAAAGGT
GGCGTGTTGCAGGCGGAATGTTTATTGAATAACGGCTGTAAAAACATTTTAGTGATCACTGGTAATATGAAGTTTAGTTC
TTTCAAGCATCGTCTAGAGGGTGCGATCCACACGCTTGAAGAGAGTGGTGCTGTCTTTGAGACTCTTGAGCTGAATAGTG
AAGGTGTGGGTCATGCGTTGCTGGATCAGATAAGGTATAAGGCGTATGACGGGATCATCTGCTATAACGATTTAATCGCG
ATTCAGGTCATGGGACTGCTACAGCATAATGGCGTCAACGTTCCGGGTGATGTTCAGGTGGTGGGTTATGATGACATACA
AATCAGTGCATCGTATTTCCCGAGTCTAACGACGGTAAGGCAGCCTTCGTATTTACTAGGAAGACTTGCGTGTGAGCAGT
TGATTGATCTGCTGAATGGTAAGCAAGTGAGAAAAGAGATAAAGATAGATGTAAGCTTAGTTGAAAGAAAAAGTACAAGG
AGTGAATAA

Upstream 100 bases:

>100_bases
ATATATTATATGTATCAAACAAAAAACAAACATCATTGTAATCGATTTCATTTCGTGATATATTTTATGTAATCGGTTAC
ACAACGTGAGGAGAGTTAGG

Downstream 100 bases:

>100_bases
AATGCGTGAGATTTATGTGATAGGTAGTGCTTCGATTGATTTAGTGGTTAAGAGTGACAGACGACCGCTGAAGGGTGAGA
CGATATTAGGTGAATCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MATIKDVAKEAGVSVATVSRAMNSSGYVHEDTLKKINRAIETLKYKPNETARTLYKKQSKIIGLLLPDISNPFFTVVARG
VEDAALERGFHVVIGNSDQNRDKERQYIDTFRLHNCVGLISSALVWEDALQYIQSSQMLHVMLDRIGETEYSVEADHYKG
GVLQAECLLNNGCKNILVITGNMKFSSFKHRLEGAIHTLEESGAVFETLELNSEGVGHALLDQIRYKAYDGIICYNDLIA
IQVMGLLQHNGVNVPGDVQVVGYDDIQISASYFPSLTTVRQPSYLLGRLACEQLIDLLNGKQVRKEIKIDVSLVERKSTR
SE

Sequences:

>Translated_322_residues
MATIKDVAKEAGVSVATVSRAMNSSGYVHEDTLKKINRAIETLKYKPNETARTLYKKQSKIIGLLLPDISNPFFTVVARG
VEDAALERGFHVVIGNSDQNRDKERQYIDTFRLHNCVGLISSALVWEDALQYIQSSQMLHVMLDRIGETEYSVEADHYKG
GVLQAECLLNNGCKNILVITGNMKFSSFKHRLEGAIHTLEESGAVFETLELNSEGVGHALLDQIRYKAYDGIICYNDLIA
IQVMGLLQHNGVNVPGDVQVVGYDDIQISASYFPSLTTVRQPSYLLGRLACEQLIDLLNGKQVRKEIKIDVSLVERKSTR
SE
>Mature_321_residues
ATIKDVAKEAGVSVATVSRAMNSSGYVHEDTLKKINRAIETLKYKPNETARTLYKKQSKIIGLLLPDISNPFFTVVARGV
EDAALERGFHVVIGNSDQNRDKERQYIDTFRLHNCVGLISSALVWEDALQYIQSSQMLHVMLDRIGETEYSVEADHYKGG
VLQAECLLNNGCKNILVITGNMKFSSFKHRLEGAIHTLEESGAVFETLELNSEGVGHALLDQIRYKAYDGIICYNDLIAI
QVMGLLQHNGVNVPGDVQVVGYDDIQISASYFPSLTTVRQPSYLLGRLACEQLIDLLNGKQVRKEIKIDVSLVERKSTRS
E

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=36.426116838488, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=29.1291291291291, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788474, Length=302, Percent_Identity=31.4569536423841, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1790369, Length=333, Percent_Identity=28.5285285285285, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1790194, Length=333, Percent_Identity=30.03003003003, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789068, Length=333, Percent_Identity=29.7297297297297, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1786540, Length=332, Percent_Identity=28.6144578313253, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790715, Length=303, Percent_Identity=25.0825082508251, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI48994940, Length=312, Percent_Identity=23.7179487179487, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787580, Length=333, Percent_Identity=23.7237237237237, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787906, Length=288, Percent_Identity=27.4305555555556, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35880; Mature: 35749

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKDVAKEAGVSVATVSRAMNSSGYVHEDTLKKINRAIETLKYKPNETARTLYKKQSK
CCCHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IIGLLLPDISNPFFTVVARGVEDAALERGFHVVIGNSDQNRDKERQYIDTFRLHNCVGLI
EEEEECCCCCCHHHHHHHCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
SSALVWEDALQYIQSSQMLHVMLDRIGETEYSVEADHYKGGVLQAECLLNNGCKNILVIT
HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHCCCCCEEEEEE
GNMKFSSFKHRLEGAIHTLEESGAVFETLELNSEGVGHALLDQIRYKAYDGIICYNDLIA
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEHHHHH
IQVMGLLQHNGVNVPGDVQVVGYDDIQISASYFPSLTTVRQPSYLLGRLACEQLIDLLNG
HHHHHHHHHCCCCCCCCEEEEECCCEEEEHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCC
KQVRKEIKIDVSLVERKSTRSE
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATIKDVAKEAGVSVATVSRAMNSSGYVHEDTLKKINRAIETLKYKPNETARTLYKKQSK
CCHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IIGLLLPDISNPFFTVVARGVEDAALERGFHVVIGNSDQNRDKERQYIDTFRLHNCVGLI
EEEEECCCCCCHHHHHHHCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
SSALVWEDALQYIQSSQMLHVMLDRIGETEYSVEADHYKGGVLQAECLLNNGCKNILVIT
HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHCCCCCEEEEEE
GNMKFSSFKHRLEGAIHTLEESGAVFETLELNSEGVGHALLDQIRYKAYDGIICYNDLIA
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEHHHHH
IQVMGLLQHNGVNVPGDVQVVGYDDIQISASYFPSLTTVRQPSYLLGRLACEQLIDLLNG
HHHHHHHHHCCCCCCCCEEEEECCCEEEEHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCC
KQVRKEIKIDVSLVERKSTRSE
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]