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The map label for this gene is ydbM [H]

Identifier: 222150381

GI number: 222150381

Start: 135176

End: 136333

Strand: Direct

Name: ydbM [H]

Synonym: MCCL_0131

Alternate gene names: 222150381

Gene position: 135176-136333 (Clockwise)

Preceding gene: 222150378

Following gene: 222150383

Centisome position: 6.43

GC content: 40.24

Gene sequence:

>1158_bases
ATGGAAAATGAATTATTTCTTGAAAGCAGTATTGAATTAAAGTGGCAAGAACGATTTATATCTAACAAAGAGTGGATTGA
AAAAACGGCGGCAGAGGCGGATAACAATGGAGTTCTTAATGATCAATTGATAGATTGGTTGATTCAGCATGGTTATCATA
TGCTGACTTTACCTGTTGAACATGGTGGTTCAGGCTGTAATATTAAAGAACTTATTATGATTCAGTCTTTACTTGCGTTT
TATGATGAATCGACAGCCTTATCCATTGGTTGGCATCTTGGTGTTGTGGGAGAAGTATTTGAGCTGAAGCTTTGGCCAGA
AGAAATGATGCTGCAATTTGCACATGACATAAGAAATGGTGCGATTACAAATCGTATCGTATCTGAGAGCGAGATGGGAA
GCCCGACGCGAGGTGGTCGTCCTTCTACTCAAGCAGTACGTGCTGGAGATAAGTATGTAATTAATGGCACTAAGACCTTT
GCATCTATGAGTCATCGTCTGACACATATGCTTGTAGGGGCTTACGATACTGAAGCATCTGCAATGGGGTTCTATTATGT
TCCAGCTGATAGTGCAGGTATTGAAATCGTTGACACATGGGATACGTTAGGTATGCGTGCAACGGCTAGCCATGATGTCA
TTTTTAATGATGTGAAAATCAATGAATGTAACAGAGTGGAAATTAATAAGGAAAAGTATGCGAATCCATGGTTGATGCAT
ATTCCGGCAGTCTATCTCGGTCTTGCGCAACGCGCGTTAGATGAGGCAGTAAAGTTCAGTAAAACGTATCAGCCGAACTC
CTTGCAGACGACCATCAGTGAACTTCCTCATATTCAGGATAAACTCGCTAAAATGGAGATGCTGATGATGCAGTCTCGTC
ATTTCATTTATCATGCATGTGATATGCACTTGGAAGGTAAGACAGAACATCTCGGACTTACATTCCAGCTGTCAAAACAT
ATCATTGTCAATAATGGACTTGAAATTATTGATTTAGCAATGCGCGTATTAGGGGCAAAGAGCCTGGAACGTACAAGAAT
ATTAGAAAGAATATTAAGGTCGATGAGAGCAGGCCTGCATAATCCACCGATGGATGATGCTGTTGAACGCAATATTGTGA
CTCAATTATTAAAAACACATGAAATCCATGCGCATTAA

Upstream 100 bases:

>100_bases
TTATTAATATCATTATATATGATTATATGAATACACGCTTATCGAAAATGATAGTTGCAAATAAAAGTGTTACAATTTCA
ATGAGAGGAGAATGACAGCA

Downstream 100 bases:

>100_bases
TGTATTGATTTCATGTGTTTTTTTGTACTTTTTTTTCTTTAGAATTAATGATGGATATAAAAAGTACGACACCTAATATG
ATAACCATTCCAATGATCTG

Product: hypothetical protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MENELFLESSIELKWQERFISNKEWIEKTAAEADNNGVLNDQLIDWLIQHGYHMLTLPVEHGGSGCNIKELIMIQSLLAF
YDESTALSIGWHLGVVGEVFELKLWPEEMMLQFAHDIRNGAITNRIVSESEMGSPTRGGRPSTQAVRAGDKYVINGTKTF
ASMSHRLTHMLVGAYDTEASAMGFYYVPADSAGIEIVDTWDTLGMRATASHDVIFNDVKINECNRVEINKEKYANPWLMH
IPAVYLGLAQRALDEAVKFSKTYQPNSLQTTISELPHIQDKLAKMEMLMMQSRHFIYHACDMHLEGKTEHLGLTFQLSKH
IIVNNGLEIIDLAMRVLGAKSLERTRILERILRSMRAGLHNPPMDDAVERNIVTQLLKTHEIHAH

Sequences:

>Translated_385_residues
MENELFLESSIELKWQERFISNKEWIEKTAAEADNNGVLNDQLIDWLIQHGYHMLTLPVEHGGSGCNIKELIMIQSLLAF
YDESTALSIGWHLGVVGEVFELKLWPEEMMLQFAHDIRNGAITNRIVSESEMGSPTRGGRPSTQAVRAGDKYVINGTKTF
ASMSHRLTHMLVGAYDTEASAMGFYYVPADSAGIEIVDTWDTLGMRATASHDVIFNDVKINECNRVEINKEKYANPWLMH
IPAVYLGLAQRALDEAVKFSKTYQPNSLQTTISELPHIQDKLAKMEMLMMQSRHFIYHACDMHLEGKTEHLGLTFQLSKH
IIVNNGLEIIDLAMRVLGAKSLERTRILERILRSMRAGLHNPPMDDAVERNIVTQLLKTHEIHAH
>Mature_385_residues
MENELFLESSIELKWQERFISNKEWIEKTAAEADNNGVLNDQLIDWLIQHGYHMLTLPVEHGGSGCNIKELIMIQSLLAF
YDESTALSIGWHLGVVGEVFELKLWPEEMMLQFAHDIRNGAITNRIVSESEMGSPTRGGRPSTQAVRAGDKYVINGTKTF
ASMSHRLTHMLVGAYDTEASAMGFYYVPADSAGIEIVDTWDTLGMRATASHDVIFNDVKINECNRVEINKEKYANPWLMH
IPAVYLGLAQRALDEAVKFSKTYQPNSLQTTISELPHIQDKLAKMEMLMMQSRHFIYHACDMHLEGKTEHLGLTFQLSKH
IIVNNGLEIIDLAMRVLGAKSLERTRILERILRSMRAGLHNPPMDDAVERNIVTQLLKTHEIHAH

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=315, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17508101, Length=310, Percent_Identity=24.5161290322581, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17506239, Length=314, Percent_Identity=23.8853503184713, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 43665; Mature: 43665

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENELFLESSIELKWQERFISNKEWIEKTAAEADNNGVLNDQLIDWLIQHGYHMLTLPVE
CCCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEC
HGGSGCNIKELIMIQSLLAFYDESTALSIGWHLGVVGEVFELKLWPEEMMLQFAHDIRNG
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHEEEECHHHHHHHHHHHHHCC
AITNRIVSESEMGSPTRGGRPSTQAVRAGDKYVINGTKTFASMSHRLTHMLVGAYDTEAS
HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCC
AMGFYYVPADSAGIEIVDTWDTLGMRATASHDVIFNDVKINECNRVEINKEKYANPWLMH
CCEEEEECCCCCCEEEEECHHHCCCEECCCCCEEEEEEEECCCCCEEECHHHCCCCHHHH
IPAVYLGLAQRALDEAVKFSKTYQPNSLQTTISELPHIQDKLAKMEMLMMQSRHFIYHAC
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEE
DMHLEGKTEHLGLTFQLSKHIIVNNGLEIIDLAMRVLGAKSLERTRILERILRSMRAGLH
EEEECCCCCEEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NPPMDDAVERNIVTQLLKTHEIHAH
CCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MENELFLESSIELKWQERFISNKEWIEKTAAEADNNGVLNDQLIDWLIQHGYHMLTLPVE
CCCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEC
HGGSGCNIKELIMIQSLLAFYDESTALSIGWHLGVVGEVFELKLWPEEMMLQFAHDIRNG
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHEEEECHHHHHHHHHHHHHCC
AITNRIVSESEMGSPTRGGRPSTQAVRAGDKYVINGTKTFASMSHRLTHMLVGAYDTEAS
HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCC
AMGFYYVPADSAGIEIVDTWDTLGMRATASHDVIFNDVKINECNRVEINKEKYANPWLMH
CCEEEEECCCCCCEEEEECHHHCCCEECCCCCEEEEEEEECCCCCEEECHHHCCCCHHHH
IPAVYLGLAQRALDEAVKFSKTYQPNSLQTTISELPHIQDKLAKMEMLMMQSRHFIYHAC
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEE
DMHLEGKTEHLGLTFQLSKHIIVNNGLEIIDLAMRVLGAKSLERTRILERILRSMRAGLH
EEEECCCCCEEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NPPMDDAVERNIVTQLLKTHEIHAH
CCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]