Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 222111219

GI number: 222111219

Start: 2169753

End: 2171240

Strand: Direct

Name: ydiU [C]

Synonym: Dtpsy_2027

Alternate gene names: 222111219

Gene position: 2169753-2171240 (Clockwise)

Preceding gene: 222111207

Following gene: 222111220

Centisome position: 57.15

GC content: 66.94

Gene sequence:

>1488_bases
ATGACGTTTGCCTCCACCCCTGACGCTACCCCGGTCGCGCCACTGGTGCCCGCCTGGCAGCCGGGCTTCGCCGCGCTGGG
CTCGGCCTTCTTCACGCCGCTGCGCCCCACTCCCCTGCCCCAGCCTCACTGGGTGGGCACCTGCGCCGAGGTAGGCGCCT
TGCTGGGCCTGCCCGAAGCCTGGCAGCAGCGCGACGACGCACTGCAGGCCTTCACAGGCAACACCCTGCTGCCCGGCAGC
CAGCCGCTGGCCAGCGTGTACAGCGGCCACCAGTTCGGCGTGTGGGCCGGCCAGTTGGGCGATGGCCGTGCCATCCTGCT
GGGCGAAACCGCCACGGGCCAAGAGGTGCAGCTCAAGGGTAGCGGGCGCACGCCCTATTCGCGCATGGGCGACGGCCGCG
CCGTGCTGCGATCGTCGATCCGCGAATTCCTGTGCAGCGAAGCCATGCATGCGCTGGGCATACCGACCACGCGCGCGCTG
TGCGTGACCGGTTCGCCCGCGCCCGTGCAGCGCGAGGAGGTGGAAACCGCCGCCGTGGTCACGCGCGTGGCTCCCAGCTT
CATCCGTTTCGGCCACTTCGAGCACTTCGCGGCGCGCGGCCAGGAAGCCGAGCTGCGCGCCCTGGCCGACTACGTGATCG
ACCGCTACTACCCCAACTGCCGCCGCTCGCAGGAATGGGAAGGCAACGCCTATGCCGCACTGCTGCATGCCGTGAGCGAG
CGCACCGCTGCACTGCTGGCGCAATGGCAGGCCGTGGGTTTTTGCCATGGCGTCATGAACACCGACAACATGAGCATCCT
GGGCCTCACGATGGACTACGGGCCTTTCCAGTTCCTGGATGCTTTCGACCCCGGACACATCTGCAATCACAGCGACGTAC
GCGGCCGCTACGCCTTCGACCGCCAGCCCAGCGTGGCGTACTGGAACCTGTTGTGTCTGGCCCAGGCGCTGCTGCCGCTG
ATCGGCGAGGTGGACACAGCGCGCGCCGCGCTGCAGTCGTACGAAGGCAGCTTTGGCCGGCAGTTCCTGGCGCGCATACG
CGCCAAGCTCGGCCTGCAGCAGGCGCGCGAAGGCGACGCCGCTTTGGTCGATGGCCTGTTGCGGCTGCTGGCCGCCGACC
GCGTGGACTACCCCATCTTCTGGCGTCGGCTGTCCGGTGCAGTAGCCACGGAGGATTTCGAACCCGTGCGCGATCTGTTC
CTGGACCGTGCAGCTCTGGACGCCTGGTTGCTACAATATAAGGAGCTATTAGCGCTTGATGGATGGGCGATAGCAGCCGA
TTTGATGCATAAAACCAATCCACGCTTCGTGCTGCGCAACCACCTGGGCGAACAGGCGATTCGCGCCGCGAAACTCGGGG
ACTTCTCCGAACTCCAAATATTGCAAAGGTTGCTGGCGCGCCCCTTCGACGACCACCCGGGGCACGAGGCCTACGCCGGC
TTTCCGCCCGACTGGGCGTCCTCCATCTCCATCAGCTGTTCCTCATGA

Upstream 100 bases:

>100_bases
AGCCACGGAGCCATCCGGAGAAATCCCACGTTCGCGCCGGCCCCCGCGCACAAGGCCTTGGCCCAGGGCGGGGCATAGGG
GCCCGGGGGACAATCCCCGC

Downstream 100 bases:

>100_bases
CCTACCCCATCCAGAAAACCGAAGACGAATGGCAGGCGCTGCTGCAGGCCAAGGGCGCCGAGCCCGCGGCTTACCAGGTC
ACGCGTCACGCGGCCACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MTFASTPDATPVAPLVPAWQPGFAALGSAFFTPLRPTPLPQPHWVGTCAEVGALLGLPEAWQQRDDALQAFTGNTLLPGS
QPLASVYSGHQFGVWAGQLGDGRAILLGETATGQEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRAL
CVTGSPAPVQREEVETAAVVTRVAPSFIRFGHFEHFAARGQEAELRALADYVIDRYYPNCRRSQEWEGNAYAALLHAVSE
RTAALLAQWQAVGFCHGVMNTDNMSILGLTMDYGPFQFLDAFDPGHICNHSDVRGRYAFDRQPSVAYWNLLCLAQALLPL
IGEVDTARAALQSYEGSFGRQFLARIRAKLGLQQAREGDAALVDGLLRLLAADRVDYPIFWRRLSGAVATEDFEPVRDLF
LDRAALDAWLLQYKELLALDGWAIAADLMHKTNPRFVLRNHLGEQAIRAAKLGDFSELQILQRLLARPFDDHPGHEAYAG
FPPDWASSISISCSS

Sequences:

>Translated_495_residues
MTFASTPDATPVAPLVPAWQPGFAALGSAFFTPLRPTPLPQPHWVGTCAEVGALLGLPEAWQQRDDALQAFTGNTLLPGS
QPLASVYSGHQFGVWAGQLGDGRAILLGETATGQEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRAL
CVTGSPAPVQREEVETAAVVTRVAPSFIRFGHFEHFAARGQEAELRALADYVIDRYYPNCRRSQEWEGNAYAALLHAVSE
RTAALLAQWQAVGFCHGVMNTDNMSILGLTMDYGPFQFLDAFDPGHICNHSDVRGRYAFDRQPSVAYWNLLCLAQALLPL
IGEVDTARAALQSYEGSFGRQFLARIRAKLGLQQAREGDAALVDGLLRLLAADRVDYPIFWRRLSGAVATEDFEPVRDLF
LDRAALDAWLLQYKELLALDGWAIAADLMHKTNPRFVLRNHLGEQAIRAAKLGDFSELQILQRLLARPFDDHPGHEAYAG
FPPDWASSISISCSS
>Mature_494_residues
TFASTPDATPVAPLVPAWQPGFAALGSAFFTPLRPTPLPQPHWVGTCAEVGALLGLPEAWQQRDDALQAFTGNTLLPGSQ
PLASVYSGHQFGVWAGQLGDGRAILLGETATGQEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALC
VTGSPAPVQREEVETAAVVTRVAPSFIRFGHFEHFAARGQEAELRALADYVIDRYYPNCRRSQEWEGNAYAALLHAVSER
TAALLAQWQAVGFCHGVMNTDNMSILGLTMDYGPFQFLDAFDPGHICNHSDVRGRYAFDRQPSVAYWNLLCLAQALLPLI
GEVDTARAALQSYEGSFGRQFLARIRAKLGLQQAREGDAALVDGLLRLLAADRVDYPIFWRRLSGAVATEDFEPVRDLFL
DRAALDAWLLQYKELLALDGWAIAADLMHKTNPRFVLRNHLGEQAIRAAKLGDFSELQILQRLLARPFDDHPGHEAYAGF
PPDWASSISISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=379, Percent_Identity=49.0765171503958, Blast_Score=308, Evalue=1e-83,
Organism=Escherichia coli, GI1787999, Length=471, Percent_Identity=49.2569002123142, Blast_Score=427, Evalue=1e-121,
Organism=Saccharomyces cerevisiae, GI6325034, Length=397, Percent_Identity=35.264483627204, Blast_Score=214, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54219; Mature: 54088

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFASTPDATPVAPLVPAWQPGFAALGSAFFTPLRPTPLPQPHWVGTCAEVGALLGLPEA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHH
WQQRDDALQAFTGNTLLPGSQPLASVYSGHQFGVWAGQLGDGRAILLGETATGQEVQLKG
HHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCEEEEEC
SGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALCVTGSPAPVQREEVETAAVV
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
TRVAPSFIRFGHFEHFAARGQEAELRALADYVIDRYYPNCRRSQEWEGNAYAALLHAVSE
HHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
RTAALLAQWQAVGFCHGVMNTDNMSILGLTMDYGPFQFLDAFDPGHICNHSDVRGRYAFD
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCEECC
RQPSVAYWNLLCLAQALLPLIGEVDTARAALQSYEGSFGRQFLARIRAKLGLQQAREGDA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH
ALVDGLLRLLAADRVDYPIFWRRLSGAVATEDFEPVRDLFLDRAALDAWLLQYKELLALD
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWAIAADLMHKTNPRFVLRNHLGEQAIRAAKLGDFSELQILQRLLARPFDDHPGHEAYAG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
FPPDWASSISISCSS
CCCCCCCCEEEEECC
>Mature Secondary Structure 
TFASTPDATPVAPLVPAWQPGFAALGSAFFTPLRPTPLPQPHWVGTCAEVGALLGLPEA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHH
WQQRDDALQAFTGNTLLPGSQPLASVYSGHQFGVWAGQLGDGRAILLGETATGQEVQLKG
HHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCEEEEEC
SGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALCVTGSPAPVQREEVETAAVV
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
TRVAPSFIRFGHFEHFAARGQEAELRALADYVIDRYYPNCRRSQEWEGNAYAALLHAVSE
HHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
RTAALLAQWQAVGFCHGVMNTDNMSILGLTMDYGPFQFLDAFDPGHICNHSDVRGRYAFD
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCEECC
RQPSVAYWNLLCLAQALLPLIGEVDTARAALQSYEGSFGRQFLARIRAKLGLQQAREGDA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH
ALVDGLLRLLAADRVDYPIFWRRLSGAVATEDFEPVRDLFLDRAALDAWLLQYKELLALD
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWAIAADLMHKTNPRFVLRNHLGEQAIRAAKLGDFSELQILQRLLARPFDDHPGHEAYAG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
FPPDWASSISISCSS
CCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA