| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
Click here to switch to the map view.
The map label for this gene is 222111151
Identifier: 222111151
GI number: 222111151
Start: 2095438
End: 2096031
Strand: Direct
Name: 222111151
Synonym: Dtpsy_1959
Alternate gene names: NA
Gene position: 2095438-2096031 (Clockwise)
Preceding gene: 222111150
Following gene: 222111154
Centisome position: 55.19
GC content: 66.67
Gene sequence:
>594_bases ATGGCTGATGTCGCTTTTTCGATCTGCGTGTACCTGGGCTCTCGCCCGGGCAACAACCCCTTGTTCACAGAAGCGGCCAC GGCCGTGGGCCACTGGATAGGCCGCCACGGCGGCCAGTTGGTCTACGGCGGCGGCCGCAGCGGCCTCATGGGCACGGTGG CGGAGGCCACGCGCGTGGCAGGCGGCCGGGTCGTGGGCATCATTCCGCAGGCTCTCGTGGACAAGGAACTGGCCAACCAC TTCTGCGATGAGCTGCACATCGTGCAGACCATGCACGAGCGCAAGGCCATGATGGCCGAGCGCAGCGATGCCTTCGTCGC CCTGCCGGGCGGCATCGGCACACTGGAAGAGCTGTTCGAAGTCTGGACCTGGCGCCAGCTGGGCTACCACGACAAGCCTA TCGGCCTGTTGGACACCGACGGCTACTACGGCGGCATGCTGGGCTTCCTGCAGCATGCGGTACATGGCGGGCTCATGGGG GAATGGCAGATGGGCCTGATCCGCGTGGGTACGGAGCCCGATGCCCTGCTCACCGCGCTGGTACAGGACGCAGGCGCGAA TGCCAGCGCCATCCCCCTGCGCAGCGTGATCTGA
Upstream 100 bases:
>100_bases CTGTCCAAGCGCGCCAAGGACTTGGGCAGCGCAGCGGTGCTGCTCAGCCTGCTGCTGTGCGCAGCCGTGTGGGCGGCCGC GCTCTACCAAAGGTTCCTAC
Downstream 100 bases:
>100_bases CGGCTGTCCCACCGCGCTGGCGTGCGCGGGATTGGCAGACGTGCCGTTCGTTACACCGCGGCGTCGTCCAGGTCGCCGGT GCGGATGCGCACCACGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MADVAFSICVYLGSRPGNNPLFTEAATAVGHWIGRHGGQLVYGGGRSGLMGTVAEATRVAGGRVVGIIPQALVDKELANH FCDELHIVQTMHERKAMMAERSDAFVALPGGIGTLEELFEVWTWRQLGYHDKPIGLLDTDGYYGGMLGFLQHAVHGGLMG EWQMGLIRVGTEPDALLTALVQDAGANASAIPLRSVI
Sequences:
>Translated_197_residues MADVAFSICVYLGSRPGNNPLFTEAATAVGHWIGRHGGQLVYGGGRSGLMGTVAEATRVAGGRVVGIIPQALVDKELANH FCDELHIVQTMHERKAMMAERSDAFVALPGGIGTLEELFEVWTWRQLGYHDKPIGLLDTDGYYGGMLGFLQHAVHGGLMG EWQMGLIRVGTEPDALLTALVQDAGANASAIPLRSVI >Mature_196_residues ADVAFSICVYLGSRPGNNPLFTEAATAVGHWIGRHGGQLVYGGGRSGLMGTVAEATRVAGGRVVGIIPQALVDKELANHF CDELHIVQTMHERKAMMAERSDAFVALPGGIGTLEELFEVWTWRQLGYHDKPIGLLDTDGYYGGMLGFLQHAVHGGLMGE WQMGLIRVGTEPDALLTALVQDAGANASAIPLRSVI
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LOG family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322406, Length=200, Percent_Identity=39, Blast_Score=138, Evalue=7e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 21025; Mature: 20894
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVAFSICVYLGSRPGNNPLFTEAATAVGHWIGRHGGQLVYGGGRSGLMGTVAEATRVA CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC GGRVVGIIPQALVDKELANHFCDELHIVQTMHERKAMMAERSDAFVALPGGIGTLEELFE CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHH VWTWRQLGYHDKPIGLLDTDGYYGGMLGFLQHAVHGGLMGEWQMGLIRVGTEPDALLTAL HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHH VQDAGANASAIPLRSVI HHHCCCCCCCCCHHHCC >Mature Secondary Structure ADVAFSICVYLGSRPGNNPLFTEAATAVGHWIGRHGGQLVYGGGRSGLMGTVAEATRVA CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC GGRVVGIIPQALVDKELANHFCDELHIVQTMHERKAMMAERSDAFVALPGGIGTLEELFE CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHH VWTWRQLGYHDKPIGLLDTDGYYGGMLGFLQHAVHGGLMGEWQMGLIRVGTEPDALLTAL HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHH VQDAGANASAIPLRSVI HHHCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 2116366 [H]