Definition Acidovorax ebreus TPSY chromosome, complete genome.
Accession NC_011992
Length 3,796,573

Click here to switch to the map view.

The map label for this gene is 222111001

Identifier: 222111001

GI number: 222111001

Start: 1923765

End: 1924835

Strand: Direct

Name: 222111001

Synonym: Dtpsy_1808

Alternate gene names: NA

Gene position: 1923765-1924835 (Clockwise)

Preceding gene: 222111000

Following gene: 222111007

Centisome position: 50.67

GC content: 60.88

Gene sequence:

>1071_bases
ATGTCCATCCGTAATGCTGCCCCCGCACTGGCTGCCGCTGCGCTCTTTGGCGCGAGCACCCCATTTGCCAAGCTCTTGGT
CGGCGATGTGGGCCCACTGCTGCTGGCTGGGTTGCTGTACCTGGGCAGCGGTGTTGGCTTGAGCTTGCTGCTCGGACTGC
GTCGCATGCGTCCCAGCGCCGCAGATGAGCGCGCTTCCCTGCGCATTCCAAAGGCGGAATGGCCATGGCTGCTAGGCGCT
GTGGCTTTTGGCGGTGTGCTTGGCCCCGTGTTCTTGCTGCTCGGGCTGACCCAGACCAGTGGCGCAGCCGCCTCGCTTTT
ACTGAACATCGAGGGCGTGTTTACCGCAGTGATTGCTTGGTTTGTCTTCAAGGAAAACGCAGACCGGCAAATCGTGCTGG
GCATGCTCACGATCATGGGCGGTGGCTTGCTGCTGTCTTGGGCGCCAGGGGCCGCCAGTTTTTCGATGGGAGCGCTGCTT
ATCGTGGCAGCCTGCCTGTGCTGGGCGATCGACAACAACCTCACACGCAAAGTGTCCACCAACGACGCGATGCTGGTGGC
AGCCATCAAAGGCTTGATTGCCGGCATCAGCAACACAAGCTTTGCCCTGCTCAGTGGTGACAGCTTGCCTGGGGTAAGCA
CCTTGGGTGCCTGCATGGCTGTCGGCTTCCTGGGCTACGGCCTCAGCCTGACCCTGTTTGTCGTGGCCCTGAGAGGGTTG
GGCACCGCACGAACTGGCGCGTACTTCTCGATCGCCCCGCTCTTTGGTGTCGCCATTTCCTTCGCTATCTGGCCCAGCAT
GCCGGGGCTGCTGTTCTGGTTGGCTGCTGCCTTGATGGCGATTGGCACATGGTTGCACATTCGTGAGCGCCATGAGCATG
TGCACACGCATGAGCCTTTAGAGCACAGCCACCGTCATCGGCATGACGAGCACCATCAACACAGCCACGATTTCGCCTGG
GATGGTGTCGAGCCTCATTCCCACCCACACCAGCATGTGGCTATGACCCACAGCCACACGCATTACCCAGACATCCATCA
TCGCCACCAGCATCCGAAGCGTCGCGATTGA

Upstream 100 bases:

>100_bases
GATTTCTCTGAGTTCAAAGAAATCACCAGATACCTCTGATCTGCTCGCAATCCCGCCACCACCCGCGCACTTCATGTCCG
AACAATCAATCTGCTGAAGC

Downstream 100 bases:

>100_bases
CCATCTGGCAACGACACAAAGCAGTCACAGCAGCGCCCACCCGTGAAGACTGCTTAGGGTCGAAAGAGGCCATAGCAAGG
CATTCTGCTCAGAATAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGA
VAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALL
IVAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL
GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAW
DGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD

Sequences:

>Translated_356_residues
MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGA
VAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALL
IVAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL
GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAW
DGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD
>Mature_355_residues
SIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGAV
AFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLI
VAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGLG
TARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAWD
GVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 38063; Mature: 37932

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
ADERASLRIPKAEWPWLLGAVAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAW
CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLIVAACLCWAIDNNLTRKVST
HHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
NDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPL
CCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
EHSHRHRHDEHHQHSHDFAWDGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD
HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSA
CCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
ADERASLRIPKAEWPWLLGAVAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAW
CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLIVAACLCWAIDNNLTRKVST
HHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
NDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPL
CCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
EHSHRHRHDEHHQHSHDFAWDGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD
HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]