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The map label for this gene is ygiD [H]

Identifier: 222110828

GI number: 222110828

Start: 1725098

End: 1725952

Strand: Direct

Name: ygiD [H]

Synonym: Dtpsy_1634

Alternate gene names: 222110828

Gene position: 1725098-1725952 (Clockwise)

Preceding gene: 222110826

Following gene: 222110830

Centisome position: 45.44

GC content: 69.94

Gene sequence:

>855_bases
ATGAGCCCCCTGTCCGAAGCCGCCCCGTTGCTGGAGGCGCTGCGCCCCTCGCCGCGCATGCCGGTGCTGTTCGTGGGCCA
TGGCAGTCCCATGAACGCCATCGAAGACAACGCCTGGCGCCGCACCTGGCAGGACATGGGGGCGGAACTGCTGGCGCGCG
GGCAGCGGCCGCAGCTCATCCTGTGCGTGTCGGCCCATTGGCTCACGCGCGGCGGCTGGCAGCTGACGGGCATGGCTGCG
CCCCGCACCATCCACGACTTTGGCGGTTTCCCGCGCGAGCTGTTCGAGCAGCAGTACCCGGCGCCGGGCGCGCCGCAGGT
GGCGCGCAGCCTGGCGCAGGAGCTGCGCTCACCCGCAACGGCGCGCGCCCTGGAGGTGGACGCGGGGGCGTGGGGCCTGG
ACCACGGCACATGGTCGGTGCTCAAGCCCATGTTCCCGGCGGCGGACATTCCGGTGCTGCAGCTCAGCATGGACTACGCG
CGCCCGCCGGCCGAGCATTACGCGCTGGGCCAGCAGCTGCGTGCGTTGCGCGAGCGTGGGGTGCTGATCGTGGGCAGCGG
CAACGTGGTGCACAACCTGCGCGCCGCACGGCGCGGCACAGGTATCAATGCAGCCTACGAGTGGGCGAACGAATTCGACG
TCAAGGTGCAGGAACTGGTGAAGGCGGGCCGCCTCGACGCGCTGGTGGCCTTCCAGCAGTGGGGCCCGATGGCGCCGCTG
GCGCATCCCACGCATGAGCATTACCTGCCACTGCTGTATGCCGCAGGCGCTGCACTGCCCACGGAGATGCCGCGCTTTTT
CAACACGGGTTTTCAGTCGGCCTCGATCTCCATGCGCTCCATGCTTTGGGGCTGA

Upstream 100 bases:

>100_bases
GGCAGAAAATCATATCGTGCCCTCTCACGCCTTCCTCTTGCCGCAGCGCCGCCGCACCATGGCCGCGCTGGCGGGCCTCG
CCACCCTTCCCGGAGTCTTC

Downstream 100 bases:

>100_bases
GCTATCTAAATTGATAGCTGCTAGCGCTTGCTGGATGGGTGTTTGAGTCCGAAAACACATGAAAAAACCGCCCGAAGGCG
GTTGTTTTTTGGGGCATCGC

Product: extradiol ring-cleavage dioxygenase class IIi protein subunit b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSPLSEAAPLLEALRPSPRMPVLFVGHGSPMNAIEDNAWRRTWQDMGAELLARGQRPQLILCVSAHWLTRGGWQLTGMAA
PRTIHDFGGFPRELFEQQYPAPGAPQVARSLAQELRSPATARALEVDAGAWGLDHGTWSVLKPMFPAADIPVLQLSMDYA
RPPAEHYALGQQLRALRERGVLIVGSGNVVHNLRAARRGTGINAAYEWANEFDVKVQELVKAGRLDALVAFQQWGPMAPL
AHPTHEHYLPLLYAAGAALPTEMPRFFNTGFQSASISMRSMLWG

Sequences:

>Translated_284_residues
MSPLSEAAPLLEALRPSPRMPVLFVGHGSPMNAIEDNAWRRTWQDMGAELLARGQRPQLILCVSAHWLTRGGWQLTGMAA
PRTIHDFGGFPRELFEQQYPAPGAPQVARSLAQELRSPATARALEVDAGAWGLDHGTWSVLKPMFPAADIPVLQLSMDYA
RPPAEHYALGQQLRALRERGVLIVGSGNVVHNLRAARRGTGINAAYEWANEFDVKVQELVKAGRLDALVAFQQWGPMAPL
AHPTHEHYLPLLYAAGAALPTEMPRFFNTGFQSASISMRSMLWG
>Mature_283_residues
SPLSEAAPLLEALRPSPRMPVLFVGHGSPMNAIEDNAWRRTWQDMGAELLARGQRPQLILCVSAHWLTRGGWQLTGMAAP
RTIHDFGGFPRELFEQQYPAPGAPQVARSLAQELRSPATARALEVDAGAWGLDHGTWSVLKPMFPAADIPVLQLSMDYAR
PPAEHYALGQQLRALRERGVLIVGSGNVVHNLRAARRGTGINAAYEWANEFDVKVQELVKAGRLDALVAFQQWGPMAPLA
HPTHEHYLPLLYAAGAALPTEMPRFFNTGFQSASISMRSMLWG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=268, Percent_Identity=46.6417910447761, Blast_Score=219, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 31226; Mature: 31095

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLSEAAPLLEALRPSPRMPVLFVGHGSPMNAIEDNAWRRTWQDMGAELLARGQRPQLI
CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LCVSAHWLTRGGWQLTGMAAPRTIHDFGGFPRELFEQQYPAPGAPQVARSLAQELRSPAT
EEEEEHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
ARALEVDAGAWGLDHGTWSVLKPMFPAADIPVLQLSMDYARPPAEHYALGQQLRALRERG
HHEEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
VLIVGSGNVVHNLRAARRGTGINAAYEWANEFDVKVQELVKAGRLDALVAFQQWGPMAPL
EEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCCCCCC
AHPTHEHYLPLLYAAGAALPTEMPRFFNTGFQSASISMRSMLWG
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SPLSEAAPLLEALRPSPRMPVLFVGHGSPMNAIEDNAWRRTWQDMGAELLARGQRPQLI
CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LCVSAHWLTRGGWQLTGMAAPRTIHDFGGFPRELFEQQYPAPGAPQVARSLAQELRSPAT
EEEEEHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
ARALEVDAGAWGLDHGTWSVLKPMFPAADIPVLQLSMDYARPPAEHYALGQQLRALRERG
HHEEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
VLIVGSGNVVHNLRAARRGTGINAAYEWANEFDVKVQELVKAGRLDALVAFQQWGPMAPL
EEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCCCCCC
AHPTHEHYLPLLYAAGAALPTEMPRFFNTGFQSASISMRSMLWG
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]