BacMap

Definition	Acidovorax ebreus TPSY chromosome, complete genome.
Accession	NC_011992
Length	3,796,573

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The map label for this gene is yahD [C]

Identifier: 222110813

GI number: 222110813

Start: 1707445

End: 1708008

Strand: Direct

Name: yahD [C]

Synonym: Dtpsy_1618

Alternate gene names: 222110813

Gene position: 1707445-1708008 (Clockwise)

Preceding gene: 222110812

Following gene: 222110815

Centisome position: 44.97

GC content: 71.63

Gene sequence:

>564_bases
ATGGCTCACACCTTGACGCTGGAGAACCCCATGACCGCCACGCCCGAACGCCCCGCCCTGGATGAAGCCACCCTGGCCTT
TGCCGAGAAGGTGTTCGACGCCGCGCGCCAGGGCGACGCCGCCCGTCTGGCGCTGTGGCTGGACAACGGCCTGCCGCCCG
ACCTGCGCAATGCCCAGGGCGACAGCCTGCTGATGCTGGCCAGCTACCACGGCCATGCCGAGGCCGCGCGGCTGTTGCTG
GCGCGCGGAGCCGATGCGGGGCTGGTGAACGGCCGCGGGCAGACGCCGTTGGCCGGCGCCGCCTTCAAGGGCGACGTGGA
CATGGTGCGCCTGCTGCTGGACGGTGGTGCGGCCGTGGACGGGCCTTCGCCCGATGGCCGTACGCCGCTGATGTTCGCCG
CCCTGTTCAACCACCCGGCCGTGGTGGAACTGCTGCTGTCACGCGGCGCCAACCCGCGCGCGGCCGACCTGCAAGGCAAC
ACCGCCTTGGGCTGCGCCCTCGCGATGAAAGCCGACGCGGCAGCCGCCCTGCTGCGCTCGGCAGGTGCCGAAAGTTTTGA
GTGA

Upstream 100 bases:

>100_bases
CAGCTGCTCTCCAAGGCCACGGGGCATTGACCCGTGCGGCCTGTCAAGCTATCGAAGCCATAGCGCAATTGCGCGGCGGG
GCAGGGCGCCCGTTCCTACA

Downstream 100 bases:

>100_bases
AAAGACGATCTGGCGCCGGTCGGATAAGCAGTTGAAGCTACTTTATTGATAGCAAAATAGTTGGCATATGCCCGGCAGTG
GATGCCACCGCCGGGCAATG

Product: ankyrin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MAHTLTLENPMTATPERPALDEATLAFAEKVFDAARQGDAARLALWLDNGLPPDLRNAQGDSLLMLASYHGHAEAARLLL
ARGADAGLVNGRGQTPLAGAAFKGDVDMVRLLLDGGAAVDGPSPDGRTPLMFAALFNHPAVVELLLSRGANPRAADLQGN
TALGCALAMKADAAAALLRSAGAESFE

Sequences:

>Translated_187_residues
MAHTLTLENPMTATPERPALDEATLAFAEKVFDAARQGDAARLALWLDNGLPPDLRNAQGDSLLMLASYHGHAEAARLLL
ARGADAGLVNGRGQTPLAGAAFKGDVDMVRLLLDGGAAVDGPSPDGRTPLMFAALFNHPAVVELLLSRGANPRAADLQGN
TALGCALAMKADAAAALLRSAGAESFE
>Mature_186_residues
AHTLTLENPMTATPERPALDEATLAFAEKVFDAARQGDAARLALWLDNGLPPDLRNAQGDSLLMLASYHGHAEAARLLLA
RGADAGLVNGRGQTPLAGAAFKGDVDMVRLLLDGGAAVDGPSPDGRTPLMFAALFNHPAVVELLLSRGANPRAADLQGNT
ALGCALAMKADAAAALLRSAGAESFE

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI157739945, Length=157, Percent_Identity=34.3949044585987, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI268607595, Length=141, Percent_Identity=34.7517730496454, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI30425444, Length=168, Percent_Identity=38.0952380952381, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI62988328, Length=141, Percent_Identity=34.7517730496454, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI32967601, Length=145, Percent_Identity=36.551724137931, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI52426737, Length=163, Percent_Identity=33.1288343558282, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI70995267, Length=138, Percent_Identity=41.304347826087, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI52426735, Length=163, Percent_Identity=33.1288343558282, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI188595682, Length=145, Percent_Identity=35.1724137931034, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI225543463, Length=153, Percent_Identity=33.9869281045752, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI225543461, Length=153, Percent_Identity=33.9869281045752, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI256574792, Length=128, Percent_Identity=39.0625, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI70780353, Length=126, Percent_Identity=38.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI215598574, Length=126, Percent_Identity=38.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780355, Length=126, Percent_Identity=38.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780359, Length=126, Percent_Identity=38.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780357, Length=126, Percent_Identity=38.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI89363047, Length=140, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI116063534, Length=142, Percent_Identity=37.3239436619718, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI103471993, Length=135, Percent_Identity=34.8148148148148, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI121582655, Length=151, Percent_Identity=35.7615894039735, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI12746412, Length=156, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI55741641, Length=145, Percent_Identity=33.7931034482759, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI46519151, Length=154, Percent_Identity=35.0649350649351, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI46519154, Length=154, Percent_Identity=35.0649350649351, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI56550047, Length=148, Percent_Identity=31.7567567567568, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI59850762, Length=148, Percent_Identity=31.7567567567568, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI304361760, Length=162, Percent_Identity=34.5679012345679, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI304361757, Length=162, Percent_Identity=34.5679012345679, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI68131557, Length=162, Percent_Identity=34.5679012345679, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI122937331, Length=118, Percent_Identity=39.8305084745763, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI157743284, Length=134, Percent_Identity=37.3134328358209, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46519147, Length=154, Percent_Identity=35.0649350649351, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI37620163, Length=154, Percent_Identity=35.0649350649351, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI24233530, Length=134, Percent_Identity=35.8208955223881, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI38569428, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI38569426, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI48928017, Length=99, Percent_Identity=46.4646464646465, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI21361135, Length=99, Percent_Identity=46.4646464646465, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI148596917, Length=180, Percent_Identity=29.4444444444444, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI38683807, Length=154, Percent_Identity=35.0649350649351, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI42734375, Length=101, Percent_Identity=37.6237623762376, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI55742857, Length=148, Percent_Identity=31.0810810810811, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI38683816, Length=154, Percent_Identity=35.0649350649351, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI223634006, Length=106, Percent_Identity=41.5094339622642, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI41327754, Length=156, Percent_Identity=31.4102564102564, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI22208957, Length=153, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI156142199, Length=130, Percent_Identity=33.0769230769231, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI7705748, Length=145, Percent_Identity=30.3448275862069, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI163914396, Length=145, Percent_Identity=30.3448275862069, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI156142197, Length=130, Percent_Identity=33.0769230769231, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI267844887, Length=142, Percent_Identity=35.9154929577465, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI34304379, Length=128, Percent_Identity=32.03125, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI90186267, Length=136, Percent_Identity=31.6176470588235, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI7705831, Length=149, Percent_Identity=35.5704697986577, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI22208951, Length=149, Percent_Identity=35.5704697986577, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71981411, Length=166, Percent_Identity=36.7469879518072, Blast_Score=81, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71981414, Length=166, Percent_Identity=36.7469879518072, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542700, Length=145, Percent_Identity=37.9310344827586, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71981389, Length=145, Percent_Identity=37.9310344827586, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25145251, Length=145, Percent_Identity=37.9310344827586, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646033, Length=131, Percent_Identity=41.9847328244275, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646031, Length=131, Percent_Identity=41.9847328244275, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646035, Length=131, Percent_Identity=41.9847328244275, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17540144, Length=139, Percent_Identity=36.6906474820144, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI212645194, Length=137, Percent_Identity=35.036496350365, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082089, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI161082110, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI161082092, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI161082096, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI161082085, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI161082081, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI161082106, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI161082099, Length=145, Percent_Identity=40.6896551724138, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24581260, Length=122, Percent_Identity=40.9836065573771, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581258, Length=122, Percent_Identity=40.9836065573771, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24650843, Length=107, Percent_Identity=41.1214953271028, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571867, Length=123, Percent_Identity=39.0243902439024, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28571865, Length=123, Percent_Identity=39.0243902439024, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281359521, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281359519, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28558752, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28558750, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28558756, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28558754, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24667933, Length=157, Percent_Identity=30.5732484076433, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24663102, Length=132, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663106, Length=132, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663091, Length=132, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663095, Length=132, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357681, Length=132, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 19262; Mature: 19131

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLTLENPMTATPERPALDEATLAFAEKVFDAARQGDAARLALWLDNGLPPDLRNAQG
CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
DSLLMLASYHGHAEAARLLLARGADAGLVNGRGQTPLAGAAFKGDVDMVRLLLDGGAAVD
CCEEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
GPSPDGRTPLMFAALFNHPAVVELLLSRGANPRAADLQGNTALGCALAMKADAAAALLRS
CCCCCCCCCEEHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
AGAESFE
CCCCCCC
>Mature Secondary Structure 
AHTLTLENPMTATPERPALDEATLAFAEKVFDAARQGDAARLALWLDNGLPPDLRNAQG
CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
DSLLMLASYHGHAEAARLLLARGADAGLVNGRGQTPLAGAAFKGDVDMVRLLLDGGAAVD
CCEEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
GPSPDGRTPLMFAALFNHPAVVELLLSRGANPRAADLQGNTALGCALAMKADAAAALLRS
CCCCCCCCCEEHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
AGAESFE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]