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The map label for this gene is cmpR [H]

Identifier: 222110815

GI number: 222110815

Start: 1709291

End: 1710190

Strand: Direct

Name: cmpR [H]

Synonym: Dtpsy_1620

Alternate gene names: 222110815

Gene position: 1709291-1710190 (Clockwise)

Preceding gene: 222110813

Following gene: 222110819

Centisome position: 45.02

GC content: 65.11

Gene sequence:

>900_bases
ATGAATATCACTTTTCGCCAACTGCGCCTGTTTCTTGCGTTGGCCGAGACCGGCAGCGTGAGCGCCGCCGCCAAGCTCAT
GCACGTGACCCAGCCCACGGCTTCGATGCAGTTGCGCGAGGTAGCGCAAGCGGTGGGCGTGCCGCTGTACGAGGTGGTGT
CGCGCCGCGTGTACCTGACCGAGGCGGGCCAGGCCCTGGCCCGCACCGCCCGCGCCATCGCCAGCGAGTGGGATGCGTTT
GAGCAGGGCATTTCGGGCGCCAAGGGCCTGACCAGCGGCCGGCTCAAGGTGGCGGTGGTGAGCACCGCCAAGTACTTCGT
TCCCCGCCTGCTGGGCAGCTTTTGCAAGCTGCACCCGCAGATCGATATTTCGCTGGAAGTTCTCAACCGCGACCATGTCA
TCACCCGTCTGCGTGCCAACCAGGACGACCTTTACGTGATGTCCATGCCGCCGGGCGATCTGCCGCTGGAGGACCACGTG
CTCATGCCCAACCCGCTGGTGGTCATCGCTCCCGCGGGGCACCGGCTGGCCGCCAAGAAACGGGTGGCCTTGCCGCAGTT
GCAGAGCGAGCGGTTCATCCTGCGCGAGAAAGGCTCAGGCACACGAATGGCGACGGACGCCCATCTGCGCCAGTTGGGCT
TTGCGCCCGCTGCGGTACTGGAGCTGGGCAGCAACGAGGCCATCAAGGAGTCGGTGCAAGGGCAGCTGGGCGTTTCCATC
GTTTCGCGGCACGCGCTGGGTCCGCACCTCGATGGCCTGGCCATTCTGAACGTGCAGGGTTTTCCCATCCAATCGCAGTG
GCACCTGGTCTGGCCCAAGGGCAAGCGGCTGTCGCCCATTGCCGAAGTGTTTCGCGGGCATTTGATGGATGAGGCTGCTG
GATGGATGCAGAGCCGCTGA

Upstream 100 bases:

>100_bases
TGCATTCTTCAACTCCACATGGGTGATGGGAGGCGATGCTAGAGAGGGCAGGGGGCAAAGTAAAATCGATTCGAATGCGG
TTATCTATAGATAAAAGTCT

Downstream 100 bases:

>100_bases
GGGGCTGCGGCGGGGCTTGGCTTATCCCTTGACCAATGAAGGCGCAGTCGCCGCCGCCTCATGGCTGTGACTGACGATGG
TGGCCAGACTCGGGGGCAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNITFRQLRLFLALAETGSVSAAAKLMHVTQPTASMQLREVAQAVGVPLYEVVSRRVYLTEAGQALARTARAIASEWDAF
EQGISGAKGLTSGRLKVAVVSTAKYFVPRLLGSFCKLHPQIDISLEVLNRDHVITRLRANQDDLYVMSMPPGDLPLEDHV
LMPNPLVVIAPAGHRLAAKKRVALPQLQSERFILREKGSGTRMATDAHLRQLGFAPAAVLELGSNEAIKESVQGQLGVSI
VSRHALGPHLDGLAILNVQGFPIQSQWHLVWPKGKRLSPIAEVFRGHLMDEAAGWMQSR

Sequences:

>Translated_299_residues
MNITFRQLRLFLALAETGSVSAAAKLMHVTQPTASMQLREVAQAVGVPLYEVVSRRVYLTEAGQALARTARAIASEWDAF
EQGISGAKGLTSGRLKVAVVSTAKYFVPRLLGSFCKLHPQIDISLEVLNRDHVITRLRANQDDLYVMSMPPGDLPLEDHV
LMPNPLVVIAPAGHRLAAKKRVALPQLQSERFILREKGSGTRMATDAHLRQLGFAPAAVLELGSNEAIKESVQGQLGVSI
VSRHALGPHLDGLAILNVQGFPIQSQWHLVWPKGKRLSPIAEVFRGHLMDEAAGWMQSR
>Mature_299_residues
MNITFRQLRLFLALAETGSVSAAAKLMHVTQPTASMQLREVAQAVGVPLYEVVSRRVYLTEAGQALARTARAIASEWDAF
EQGISGAKGLTSGRLKVAVVSTAKYFVPRLLGSFCKLHPQIDISLEVLNRDHVITRLRANQDDLYVMSMPPGDLPLEDHV
LMPNPLVVIAPAGHRLAAKKRVALPQLQSERFILREKGSGTRMATDAHLRQLGFAPAAVLELGSNEAIKESVQGQLGVSI
VSRHALGPHLDGLAILNVQGFPIQSQWHLVWPKGKRLSPIAEVFRGHLMDEAAGWMQSR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=254, Percent_Identity=29.5275590551181, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=28.2312925170068, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=29.8039215686275, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=25.6055363321799, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=26.0726072607261, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789204, Length=298, Percent_Identity=26.510067114094, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=249, Percent_Identity=24.4979919678715, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788887, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787530, Length=255, Percent_Identity=24.3137254901961, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=284, Percent_Identity=26.056338028169, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=22.5988700564972, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=292, Percent_Identity=23.6301369863014, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790208, Length=244, Percent_Identity=26.6393442622951, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=24.1666666666667, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32692; Mature: 32692

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITFRQLRLFLALAETGSVSAAAKLMHVTQPTASMQLREVAQAVGVPLYEVVSRRVYLT
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCEEEEE
EAGQALARTARAIASEWDAFEQGISGAKGLTSGRLKVAVVSTAKYFVPRLLGSFCKLHPQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
IDISLEVLNRDHVITRLRANQDDLYVMSMPPGDLPLEDHVLMPNPLVVIAPAGHRLAAKK
CEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCEEEEECCCCCHHHHH
RVALPQLQSERFILREKGSGTRMATDAHLRQLGFAPAAVLELGSNEAIKESVQGQLGVSI
HHCCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCHHHHHH
VSRHALGPHLDGLAILNVQGFPIQSQWHLVWPKGKRLSPIAEVFRGHLMDEAAGWMQSR
HHHHCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNITFRQLRLFLALAETGSVSAAAKLMHVTQPTASMQLREVAQAVGVPLYEVVSRRVYLT
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCEEEEE
EAGQALARTARAIASEWDAFEQGISGAKGLTSGRLKVAVVSTAKYFVPRLLGSFCKLHPQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
IDISLEVLNRDHVITRLRANQDDLYVMSMPPGDLPLEDHVLMPNPLVVIAPAGHRLAAKK
CEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCEEEEECCCCCHHHHH
RVALPQLQSERFILREKGSGTRMATDAHLRQLGFAPAAVLELGSNEAIKESVQGQLGVSI
HHCCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCHHHHHH
VSRHALGPHLDGLAILNVQGFPIQSQWHLVWPKGKRLSPIAEVFRGHLMDEAAGWMQSR
HHHHCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA