| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is icd [H]
Identifier: 222110756
GI number: 222110756
Start: 1643603
End: 1645837
Strand: Direct
Name: icd [H]
Synonym: Dtpsy_1559
Alternate gene names: 222110756
Gene position: 1643603-1645837 (Clockwise)
Preceding gene: 222110755
Following gene: 222110759
Centisome position: 43.29
GC content: 63.4
Gene sequence:
>2235_bases ATGAGCACCCAGAAACCCACCATCATCTATACCCTGACCGACGAGGCTCCCCGCCTGGCCACGGCCTCCTTCCTGCCCAT CGTGCGCAGCTTCGCGTCGGTGGCCGGTATCGAAGTGGCCGAGAGCGACATCTCCGTGGCGGCGCGCGTCCTGGGTGAGT TCCCCGACTTCCTGACGCCCGAGCAGCGCGTACCCAATACGCTGGCTGAACTGGGCAAGAAGACGCTCGAGCCCGACGTC AACATCATCAAGCTGCCCAACATCAGCGCGTCCGTGGCGCAGTTGATCGCCGCCATCAAGGAACTGCAAGGCAAGGGCTA CAACCTTCCCGACTACCCCGAGAACCCCACCACCGACGAGGAAAAGGCCATCAAGGCCCGCTATGGCAAATGCCTGGGCT CGTCCGTGAACCCGGTGCTGCGCGAGGGCAACTCCGACCGCCGCGCGCCTGCCGCGGTGAAGAACTACGCCAAGAAGCAC CCGCACTCCATGGGCGAGTGGAAGCAGTGGTCGCAGACGCATGTGTCCCACATGCACGAGGGCGACTTCTATCATGGCGA AAAGTCCCTGACCCTGGACAAGGCCCGCGACGTAAAGATGGTGCTGGAGACGAAGTCCGGCAAGACCGTCGTGCTGAAGG AAAAGGTCGCGCTCAAGGACGGCGAGATCATCGACTCCATGTTCATGAGCAAGAAGGCCCTGTGCGCCTTCTACGAGAAG GAACTGGCCGACTGCAAGGAAGCCGGCATCCTGTTCTCGCTGCACGTGAAGGCCACGATGATGAAGGTCTCGCACCCGAT CGTGTTCGGTCACTGCGTGAAGATCTACTACAAGGAAGCCTTCGAGAAGCACGGCGCGCTGTTTGACGAGCTGGGCATCA ACGTCAACAACGGCATGGCCACGTTGTACGAGAAGATCGAGACGCTGCCAGCTTCCAAGCGCGAAGAGATCATCCGCGAC CTGCACGCCTGCCAGGAGCACCGTCCGGCGCTGGCCATGGTGGACTCCGCCAAGGGCATCACCAACTTCCACTCGCCCAA CGACATCATCGTGGACGCCTCCATGCCCGCCATGATCCGCCAGGGCGGCAAGATGTGGGGCGCCGACGGCAAGCCTTACG ACTGCAAGGCCGTGATGCCCGAGTCGACCTTCGCCCGTATCTACCAGGAGATGATCAACTTCTGCAAGTGGCACGGCAAC TTCGACCCGCGCACCATGGGCACCGTGCCCAACGTGGGCCTGATGGCGCAGAAGGCCGAGGAATACGGCTCGCATGACAA GACCTTCGAGATCGCCGAAGACGGCGTGGCCAACATCGTGGACATCGCCACGGGTGAAGTGCTGCTGTCGCAGAACGTGG AAACCGGCGACATCTGGCGTATGTGCCAGGTCAAGGACGCTCCGATCCGCGACTGGGTGAAGCTGGCCGTGACCCGCGCA CGCAACTCCGGCATGCCCGCCGTGTTCTGGCTGGACCCCTATCGCCCGCACGAGAACGAGCTGATCAAGAAGGTCGAGAA GTACCTGAAGGACCACGACACTACCGGCCTGAACATCCAGATCATGAGCCAGGTGCGTGCAATGCGCTTCACGCTGGAGC GCGTGGCGCGTGGCCTGGACACCATCTCGGTGACCGGCAACATCCTGCGCGACTACCTGACCGACCTGTTCCCGATCATG GAACTGGGCACTTCCGCCAAGATGCTGTCCATCGTGCCCCTGATGGCCGGCGGCGGCATGTACGAGACGGGCGCGGGCGG CTCCGCTCCCAAGCACGTGCAGCAGCTGGTCGAAGAGAACTACCTGCGCTGGGACTCGCTGGGGGAATTCCTGGCGCTGG CCGTGTCGCTGGAAGACCTGGGCCTGAAGGAAAACAACGCCCGCGCCAAGCTGCTGGCCAAGACGCTGGACCAGGCTACC GGCAAGCTGCTGGACGAGAACAAGTCGCCCTCGCGCAAGGTGGGCGAGATCGACAACCGCGGCAGCCAGTTCTATCTGTC GCTGTACTGGGCCCAGGCCCTGGCCGCGCAGTCCGAGGACGCCGCGCTGGCCGCCAAGTTCGCTCCGTTGGCCAAGACCC TGGCCGATAACGAGGCCAAGATCGTCGAGGAACTGCGTGTGGTGCAGGGCAAGCCCGCCGACATCGGTGGCTACTACCTG CCCGATCTGTCCAAGCTGGACGCCGTGATGCGCCCCAGCGCCACGTTCAACGCGGCCATCGCAGCGCTCGCCTGA
Upstream 100 bases:
>100_bases CAACGACTCGCGCACAATCCGGACTGTCACATCGGATGACTGCGCGCGAGGCCGCGGACCGGCGGCGCAAGACCTCTGTT TTGTTTACCTGAGAGACGAG
Downstream 100 bases:
>100_bases CGGAGCACCGGCTGGGTGTCATCCCGGCCGTTGGCACCCGGCCGTGACCGGCCTTCCCGCAAGGGGAGGCCGGTTTCTTT TTGTCCGGCCTCCGGGGGGT
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 744; Mature: 743
Protein sequence:
>744_residues MSTQKPTIIYTLTDEAPRLATASFLPIVRSFASVAGIEVAESDISVAARVLGEFPDFLTPEQRVPNTLAELGKKTLEPDV NIIKLPNISASVAQLIAAIKELQGKGYNLPDYPENPTTDEEKAIKARYGKCLGSSVNPVLREGNSDRRAPAAVKNYAKKH PHSMGEWKQWSQTHVSHMHEGDFYHGEKSLTLDKARDVKMVLETKSGKTVVLKEKVALKDGEIIDSMFMSKKALCAFYEK ELADCKEAGILFSLHVKATMMKVSHPIVFGHCVKIYYKEAFEKHGALFDELGINVNNGMATLYEKIETLPASKREEIIRD LHACQEHRPALAMVDSAKGITNFHSPNDIIVDASMPAMIRQGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGN FDPRTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGVANIVDIATGEVLLSQNVETGDIWRMCQVKDAPIRDWVKLAVTRA RNSGMPAVFWLDPYRPHENELIKKVEKYLKDHDTTGLNIQIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIM ELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENYLRWDSLGEFLALAVSLEDLGLKENNARAKLLAKTLDQAT GKLLDENKSPSRKVGEIDNRGSQFYLSLYWAQALAAQSEDAALAAKFAPLAKTLADNEAKIVEELRVVQGKPADIGGYYL PDLSKLDAVMRPSATFNAAIAALA
Sequences:
>Translated_744_residues MSTQKPTIIYTLTDEAPRLATASFLPIVRSFASVAGIEVAESDISVAARVLGEFPDFLTPEQRVPNTLAELGKKTLEPDV NIIKLPNISASVAQLIAAIKELQGKGYNLPDYPENPTTDEEKAIKARYGKCLGSSVNPVLREGNSDRRAPAAVKNYAKKH PHSMGEWKQWSQTHVSHMHEGDFYHGEKSLTLDKARDVKMVLETKSGKTVVLKEKVALKDGEIIDSMFMSKKALCAFYEK ELADCKEAGILFSLHVKATMMKVSHPIVFGHCVKIYYKEAFEKHGALFDELGINVNNGMATLYEKIETLPASKREEIIRD LHACQEHRPALAMVDSAKGITNFHSPNDIIVDASMPAMIRQGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGN FDPRTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGVANIVDIATGEVLLSQNVETGDIWRMCQVKDAPIRDWVKLAVTRA RNSGMPAVFWLDPYRPHENELIKKVEKYLKDHDTTGLNIQIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIM ELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENYLRWDSLGEFLALAVSLEDLGLKENNARAKLLAKTLDQAT GKLLDENKSPSRKVGEIDNRGSQFYLSLYWAQALAAQSEDAALAAKFAPLAKTLADNEAKIVEELRVVQGKPADIGGYYL PDLSKLDAVMRPSATFNAAIAALA >Mature_743_residues STQKPTIIYTLTDEAPRLATASFLPIVRSFASVAGIEVAESDISVAARVLGEFPDFLTPEQRVPNTLAELGKKTLEPDVN IIKLPNISASVAQLIAAIKELQGKGYNLPDYPENPTTDEEKAIKARYGKCLGSSVNPVLREGNSDRRAPAAVKNYAKKHP HSMGEWKQWSQTHVSHMHEGDFYHGEKSLTLDKARDVKMVLETKSGKTVVLKEKVALKDGEIIDSMFMSKKALCAFYEKE LADCKEAGILFSLHVKATMMKVSHPIVFGHCVKIYYKEAFEKHGALFDELGINVNNGMATLYEKIETLPASKREEIIRDL HACQEHRPALAMVDSAKGITNFHSPNDIIVDASMPAMIRQGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNF DPRTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGVANIVDIATGEVLLSQNVETGDIWRMCQVKDAPIRDWVKLAVTRAR NSGMPAVFWLDPYRPHENELIKKVEKYLKDHDTTGLNIQIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIME LGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENYLRWDSLGEFLALAVSLEDLGLKENNARAKLLAKTLDQATG KLLDENKSPSRKVGEIDNRGSQFYLSLYWAQALAAQSEDAALAAKFAPLAKTLADNEAKIVEELRVVQGKPADIGGYYLP DLSKLDAVMRPSATFNAAIAALA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 82169; Mature: 82038
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQKPTIIYTLTDEAPRLATASFLPIVRSFASVAGIEVAESDISVAARVLGEFPDFLTP CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC EQRVPNTLAELGKKTLEPDVNIIKLPNISASVAQLIAAIKELQGKGYNLPDYPENPTTDE HHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EKAIKARYGKCLGSSVNPVLREGNSDRRAPAAVKNYAKKHPHSMGEWKQWSQTHVSHMHE HHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GDFYHGEKSLTLDKARDVKMVLETKSGKTVVLKEKVALKDGEIIDSMFMSKKALCAFYEK CCCCCCCCCEECCCCCCEEEEEECCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHH ELADCKEAGILFSLHVKATMMKVSHPIVFGHCVKIYYKEAFEKHGALFDELGINVNNGMA HHHHHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH TLYEKIETLPASKREEIIRDLHACQEHRPALAMVDSAKGITNFHSPNDIIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHH QGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNFDPRTMGTVPNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIAEDGVANIVDIATGEVLLSQNVETGDIWRMCQVKDAPIRDWVKLAVTRA HHCCCCCEEEHHHCCHHHHHHHCCCCCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHH RNSGMPAVFWLDPYRPHENELIKKVEKYLKDHDTTGLNIQIMSQVRAMRFTLERVARGLD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEEN EEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH YLRWDSLGEFLALAVSLEDLGLKENNARAKLLAKTLDQATGKLLDENKSPSRKVGEIDNR CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSQFYLSLYWAQALAAQSEDAALAAKFAPLAKTLADNEAKIVEELRVVQGKPADIGGYYL CCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEC PDLSKLDAVMRPSATFNAAIAALA CCHHHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure STQKPTIIYTLTDEAPRLATASFLPIVRSFASVAGIEVAESDISVAARVLGEFPDFLTP CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC EQRVPNTLAELGKKTLEPDVNIIKLPNISASVAQLIAAIKELQGKGYNLPDYPENPTTDE HHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EKAIKARYGKCLGSSVNPVLREGNSDRRAPAAVKNYAKKHPHSMGEWKQWSQTHVSHMHE HHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GDFYHGEKSLTLDKARDVKMVLETKSGKTVVLKEKVALKDGEIIDSMFMSKKALCAFYEK CCCCCCCCCEECCCCCCEEEEEECCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHH ELADCKEAGILFSLHVKATMMKVSHPIVFGHCVKIYYKEAFEKHGALFDELGINVNNGMA HHHHHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH TLYEKIETLPASKREEIIRDLHACQEHRPALAMVDSAKGITNFHSPNDIIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHH QGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNFDPRTMGTVPNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIAEDGVANIVDIATGEVLLSQNVETGDIWRMCQVKDAPIRDWVKLAVTRA HHCCCCCEEEHHHCCHHHHHHHCCCCCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHH RNSGMPAVFWLDPYRPHENELIKKVEKYLKDHDTTGLNIQIMSQVRAMRFTLERVARGLD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEEN EEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH YLRWDSLGEFLALAVSLEDLGLKENNARAKLLAKTLDQATGKLLDENKSPSRKVGEIDNR CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSQFYLSLYWAQALAAQSEDAALAAKFAPLAKTLADNEAKIVEELRVVQGKPADIGGYYL CCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEC PDLSKLDAVMRPSATFNAAIAALA CCHHHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]