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The map label for this gene is sodB [H]

Identifier: 222110755

GI number: 222110755

Start: 1642678

End: 1643259

Strand: Direct

Name: sodB [H]

Synonym: Dtpsy_1558

Alternate gene names: 222110755

Gene position: 1642678-1643259 (Clockwise)

Preceding gene: 222110754

Following gene: 222110756

Centisome position: 43.27

GC content: 61.68

Gene sequence:

>582_bases
ATGGAACATACCCTGCCTCCGCTGCCCTACGCGATTGATGCCCTGGCCCCGCACTACAGCCAGGAAACGCTGGAATACCA
CCACGGCAAGCACCACAACGCCTACGTGGTGAATCTGAACAACCTGCAAAAGGGCACCGAGTTCGAGAACATGACGCTGG
AGGAGATCGTCAAGAAGTCGTCCGGCGGTATCTACAACAACGCCGCGCAGATCTGGAACCACACCTTCTTCTGGAACTGC
ATGGCCCCCAACGGCGGTGGCGAGCCCAGCGGCGCGCTGGCCCAGGCGATCCATGCCAAGTGGGGCAGCTACGCCGCGTT
CAAGGAAGCGTTCGTGAAGAGCGCCGTGGGCAACTTCGGCTCCGGCTGGACCTGGCTGGTCAAGAAGGCCGACGGTACGG
TGGACATCGTGAACACCGGTGCCGCCGGCACGCCGCTGACCACGGCCGACAAGGCGCTGCTGACGGTGGACGTGTGGGAA
CACGCCTATTACATCGACTACCGCAACCTGCGTCCCAAGTTCGTCGAGACCTTCCTGGACAAGCTGGTGAACTGGAAGTT
CGCCGAAACCAACTTCGCCTGA

Upstream 100 bases:

>100_bases
CCTACAGCGGCGAGTGCTATTACTTTCCTACAATGCCCGTTGCTTCGCCGTGCCCTGGTGGCCGCGATCTCCCCCATCCC
AACCCACGAAGGACTTGACC

Downstream 100 bases:

>100_bases
GCCGAAAGCGCACGCCGCGCCCTGCGGCGTTGAGCGACCCAAAGACAAACGGCCCGCAGAGGAATCTGCGGGCCGTTTTT
TCGTCTGGCTTGACGGCCCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEHTLPPLPYAIDALAPHYSQETLEYHHGKHHNAYVVNLNNLQKGTEFENMTLEEIVKKSSGGIYNNAAQIWNHTFFWNC
MAPNGGGEPSGALAQAIHAKWGSYAAFKEAFVKSAVGNFGSGWTWLVKKADGTVDIVNTGAAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLDKLVNWKFAETNFA

Sequences:

>Translated_193_residues
MEHTLPPLPYAIDALAPHYSQETLEYHHGKHHNAYVVNLNNLQKGTEFENMTLEEIVKKSSGGIYNNAAQIWNHTFFWNC
MAPNGGGEPSGALAQAIHAKWGSYAAFKEAFVKSAVGNFGSGWTWLVKKADGTVDIVNTGAAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLDKLVNWKFAETNFA
>Mature_193_residues
MEHTLPPLPYAIDALAPHYSQETLEYHHGKHHNAYVVNLNNLQKGTEFENMTLEEIVKKSSGGIYNNAAQIWNHTFFWNC
MAPNGGGEPSGALAQAIHAKWGSYAAFKEAFVKSAVGNFGSGWTWLVKKADGTVDIVNTGAAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLDKLVNWKFAETNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=40.3061224489796, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=40.3061224489796, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI67782309, Length=188, Percent_Identity=33.5106382978723, Blast_Score=94, Evalue=7e-20,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=64.7668393782383, Blast_Score=265, Evalue=1e-72,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=39.6135265700483, Blast_Score=140, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=38.6138613861386, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=35.5, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=33.1683168316832, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=36.734693877551, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21522; Mature: 21522

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTLPPLPYAIDALAPHYSQETLEYHHGKHHNAYVVNLNNLQKGTEFENMTLEEIVKKS
CCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
SGGIYNNAAQIWNHTFFWNCMAPNGGGEPSGALAQAIHAKWGSYAAFKEAFVKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SGWTWLVKKADGTVDIVNTGAAGTPLTTADKALLTVDVWEHAYYIDYRNLRPKFVETFLD
CCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHH
KLVNWKFAETNFA
HHHCCCCCCCCCC
>Mature Secondary Structure
MEHTLPPLPYAIDALAPHYSQETLEYHHGKHHNAYVVNLNNLQKGTEFENMTLEEIVKKS
CCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
SGGIYNNAAQIWNHTFFWNCMAPNGGGEPSGALAQAIHAKWGSYAAFKEAFVKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SGWTWLVKKADGTVDIVNTGAAGTPLTTADKALLTVDVWEHAYYIDYRNLRPKFVETFLD
CCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHH
KLVNWKFAETNFA
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]