| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is pheT [H]
Identifier: 222110651
GI number: 222110651
Start: 1520063
End: 1522507
Strand: Direct
Name: pheT [H]
Synonym: Dtpsy_1453
Alternate gene names: 222110651
Gene position: 1520063-1522507 (Clockwise)
Preceding gene: 222110650
Following gene: 222110652
Centisome position: 40.04
GC content: 67.4
Gene sequence:
>2445_bases ATGCAATTCCCCGAATCCTGGTTGCGCGAGTTCTGCAACCCTCCGCTCAACACCCAAGAACTGGCCGACACCCTGACGAT GGCAGGGCTGGAGGTCGAAGAGCTGCAGCCCGTCGCGCCGCCGTTCACGAAGATCGTCGTCGGCGAGATCAAGGATGCTC AGCAGCACCCCAATGCCGACCGCCTGCGCGTGTGCCAGGTGGATGTGGGGCAGGGCGAGCCGCTGACCATCGTCTGCGGC GCGCCCAATGCCCGCGTGGGCATCAAGGTGCCGTGCGCCATGGTGGGCGCGGAGCTGCCGCCCGGCGAGGATGGCAAGCC GTTTCTCATCAAGGTGGGCAAGCTGCGCGGTGTGGAGAGCTTTGGCATGCTGTGCTCGGCGCGCGAGCTGAAACTGTCGG AGGACCATGGCGGCCTGCTGGAACTACCGGCCGACGCGCCGCTGGGCCAGAACATCCGCCAGTACCTGAACCTGGACGAC ACGCTGTTCACGCTCAAGCTCACACCCAACCTGGCGCATTGCCTGAGTGTCTACGGCATCGCGCGCGAGGTGTCCGCGCT GACGGGCGCGCCGCTGAAGGCGCCGCAGTTCCCCGCCATGACCACCGCGATCGATGACCGCTTGCCCGTGCGCGTGAGCG CGCCTGACCTGTGCGGGCGCTTCTCCGGCCGCGTCGTGCGCAACGTCAATACCCAGGCCGCCACGCCGCAGTGGATGGTG GACCGCCTGGCGCGCTGCGGCCAGCGCAGTGTCTCGCCGCTGGTGGACATCTCCAACTACGTGATGTTCGAGTTCGGCCG CCCGTCGCACATCTTCGACCTGGACAAGATCCATGGCGGCCTGGAAGTGCGCTGGGGCAAGGCCGGCGAACAACTCAAGC TGCTCAACGGCAACACCGTCACCGTCGATGAGAAGGTGGGCGTGATCGCCGACGAGCGCGAGGTGGAGTCGCTTGCCGGC ATCATGGGTGGTGACGCCACGGCTGTGTCGGATGACACGCGCAACATCTACGTCGAGGCGGCCTTCTGGTGGCCAGAGGC CGTAGCCGGCCGCTCGCGCCGCTACAACTTCTCCACCGACGCCGGCCATCGCTTCGAGCGCGGCGTGGATCCCGAGCTGA CCGTGGAGCACATCGAGCGCATCACGCAGCTGATCGTCGACATTTGCGGTACGCCAGAGACGGCATGCGCTCCCATTGAT GATCAGCGCGTCAACATGCCCGCGCAAACACCGGTGCGCATGCGCGTCGCGCGTGCGGCCAAGGTGATCGGCATGCCGCT CACGCAGGCGCAGTGCGTGGATGCGCTGAGGCGCCTGGGCCTGCCGCTGCAGGAGGAAGAGGGTGCCGTGACGGTCACGC CACCGTCGTTCCGCTTCGACCTGCGCCTGGAGGAAGACCTGATCGAGGAAGTGGCGCGCGTGGTGGGCTACAACAACCTG CCCACCACCCCGCCGCTGGCGCCGATCACGCCCAAGTTGCGCGCTGAATCGCGCCGCAGCAGCTTCGCGGTGCGCCGTGA ACTGGCGGCATTGGGCTACCAGGAGACCATCAACTTCAGCTTTGTCGAAGAGCATTGGGAAAAGGAACTGGCCGGCAACG CCGCGCCGATCAAGCTGCTCAACCCCATCGCCAGCCACCTGAGCGTCATGCGCTCGTCGCTGCTGGGCTCTTTGCTGCAG GTGCTCAAGTTCAACCTGGACCGCAAGGCCGGCCGCGTGCGCGTGTTCGAGCTGGGGCGGGTGTTCCTGCGTGATGCGAG CGTGCAAAACACCGACCGCACGGTGGAAGGCTTCGCGCAGCCGATGCGGGTCGCGGGCCTGGCCTATGGTGCGGCCGATG CGCTGCAGTGGGGCCGCAAGGACAAGGCGGTGGACTTCTACGATGCCAAGGGTGATGTGGAAGCGCTGCTCGCGCCGCTG CGCCCCACGTTCGAGCCAGCAGCGCATCCGGCACTGCACCCGGGCCGCTGCGCGCGCGTGCTGCTGGAGGGTCACCCCAT CGGCTTTGTGGGCGAATTGCATCCGCAATGGCGCCAGTCCTGGGACCTGCCGGCTGCGCCGATGATGTTTGAACTGGAGC TGGACGCCGTGCTGCAGCGCAAGGTGCCGGGCTTTCGCCCCGTGGCCAAGCGCCAGCTGGTGGAGCGGGACATTGCCGTG GTTGTGGCCGAGCGGGTCTCGCAGGATGAGGTGATGCGTGCCATTGGCGGTGCACTGGCAGGCGATCTGCTGCGCTCCGC GGTGCTGTTCGATGTCTTCCGGCCCCAGCCGCAGCGTGCGGGCGAGGCCGTGCCGGCGGGCGCTCTGGCGCAGGGCGAGA AGAGCCTGGCCATTCGCCTGACGCTGGGCAGCGACGCCGCCGCGTTGACGGACGCTGAGATCGAAGCCGCAGTGCAATCG GTGCTGCAGGCGCTGGGTACCCACACAGGAGCGAGGTTGCGATGA
Upstream 100 bases:
>100_bases CGCTTGTTAAGCCTAATCTTCAATATGTTTCCATATGGAAAACAATAAGTAGCAAGCGCTAGCAGCTCTCTTTTCAAGAG CACGCCAAAGAAGTCTGACT
Downstream 100 bases:
>100_bases CTCTGGGGATGGAGCCGGGGCCGGTGGAGTTCGCCGTAGAAAGCCTGGAATCGCCTGCGCTGACCAAAGCGCAGCTGGCG GATCTGCTGTTCGAGCACAT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MQFPESWLREFCNPPLNTQELADTLTMAGLEVEELQPVAPPFTKIVVGEIKDAQQHPNADRLRVCQVDVGQGEPLTIVCG APNARVGIKVPCAMVGAELPPGEDGKPFLIKVGKLRGVESFGMLCSARELKLSEDHGGLLELPADAPLGQNIRQYLNLDD TLFTLKLTPNLAHCLSVYGIAREVSALTGAPLKAPQFPAMTTAIDDRLPVRVSAPDLCGRFSGRVVRNVNTQAATPQWMV DRLARCGQRSVSPLVDISNYVMFEFGRPSHIFDLDKIHGGLEVRWGKAGEQLKLLNGNTVTVDEKVGVIADEREVESLAG IMGGDATAVSDDTRNIYVEAAFWWPEAVAGRSRRYNFSTDAGHRFERGVDPELTVEHIERITQLIVDICGTPETACAPID DQRVNMPAQTPVRMRVARAAKVIGMPLTQAQCVDALRRLGLPLQEEEGAVTVTPPSFRFDLRLEEDLIEEVARVVGYNNL PTTPPLAPITPKLRAESRRSSFAVRRELAALGYQETINFSFVEEHWEKELAGNAAPIKLLNPIASHLSVMRSSLLGSLLQ VLKFNLDRKAGRVRVFELGRVFLRDASVQNTDRTVEGFAQPMRVAGLAYGAADALQWGRKDKAVDFYDAKGDVEALLAPL RPTFEPAAHPALHPGRCARVLLEGHPIGFVGELHPQWRQSWDLPAAPMMFELELDAVLQRKVPGFRPVAKRQLVERDIAV VVAERVSQDEVMRAIGGALAGDLLRSAVLFDVFRPQPQRAGEAVPAGALAQGEKSLAIRLTLGSDAAALTDAEIEAAVQS VLQALGTHTGARLR
Sequences:
>Translated_814_residues MQFPESWLREFCNPPLNTQELADTLTMAGLEVEELQPVAPPFTKIVVGEIKDAQQHPNADRLRVCQVDVGQGEPLTIVCG APNARVGIKVPCAMVGAELPPGEDGKPFLIKVGKLRGVESFGMLCSARELKLSEDHGGLLELPADAPLGQNIRQYLNLDD TLFTLKLTPNLAHCLSVYGIAREVSALTGAPLKAPQFPAMTTAIDDRLPVRVSAPDLCGRFSGRVVRNVNTQAATPQWMV DRLARCGQRSVSPLVDISNYVMFEFGRPSHIFDLDKIHGGLEVRWGKAGEQLKLLNGNTVTVDEKVGVIADEREVESLAG IMGGDATAVSDDTRNIYVEAAFWWPEAVAGRSRRYNFSTDAGHRFERGVDPELTVEHIERITQLIVDICGTPETACAPID DQRVNMPAQTPVRMRVARAAKVIGMPLTQAQCVDALRRLGLPLQEEEGAVTVTPPSFRFDLRLEEDLIEEVARVVGYNNL PTTPPLAPITPKLRAESRRSSFAVRRELAALGYQETINFSFVEEHWEKELAGNAAPIKLLNPIASHLSVMRSSLLGSLLQ VLKFNLDRKAGRVRVFELGRVFLRDASVQNTDRTVEGFAQPMRVAGLAYGAADALQWGRKDKAVDFYDAKGDVEALLAPL RPTFEPAAHPALHPGRCARVLLEGHPIGFVGELHPQWRQSWDLPAAPMMFELELDAVLQRKVPGFRPVAKRQLVERDIAV VVAERVSQDEVMRAIGGALAGDLLRSAVLFDVFRPQPQRAGEAVPAGALAQGEKSLAIRLTLGSDAAALTDAEIEAAVQS VLQALGTHTGARLR >Mature_814_residues MQFPESWLREFCNPPLNTQELADTLTMAGLEVEELQPVAPPFTKIVVGEIKDAQQHPNADRLRVCQVDVGQGEPLTIVCG APNARVGIKVPCAMVGAELPPGEDGKPFLIKVGKLRGVESFGMLCSARELKLSEDHGGLLELPADAPLGQNIRQYLNLDD TLFTLKLTPNLAHCLSVYGIAREVSALTGAPLKAPQFPAMTTAIDDRLPVRVSAPDLCGRFSGRVVRNVNTQAATPQWMV DRLARCGQRSVSPLVDISNYVMFEFGRPSHIFDLDKIHGGLEVRWGKAGEQLKLLNGNTVTVDEKVGVIADEREVESLAG IMGGDATAVSDDTRNIYVEAAFWWPEAVAGRSRRYNFSTDAGHRFERGVDPELTVEHIERITQLIVDICGTPETACAPID DQRVNMPAQTPVRMRVARAAKVIGMPLTQAQCVDALRRLGLPLQEEEGAVTVTPPSFRFDLRLEEDLIEEVARVVGYNNL PTTPPLAPITPKLRAESRRSSFAVRRELAALGYQETINFSFVEEHWEKELAGNAAPIKLLNPIASHLSVMRSSLLGSLLQ VLKFNLDRKAGRVRVFELGRVFLRDASVQNTDRTVEGFAQPMRVAGLAYGAADALQWGRKDKAVDFYDAKGDVEALLAPL RPTFEPAAHPALHPGRCARVLLEGHPIGFVGELHPQWRQSWDLPAAPMMFELELDAVLQRKVPGFRPVAKRQLVERDIAV VVAERVSQDEVMRAIGGALAGDLLRSAVLFDVFRPQPQRAGEAVPAGALAQGEKSLAIRLTLGSDAAALTDAEIEAAVQS VLQALGTHTGARLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=818, Percent_Identity=41.320293398533, Blast_Score=604, Evalue=1e-174, Organism=Drosophila melanogaster, GI21355211, Length=404, Percent_Identity=23.7623762376238, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 88899; Mature: 88899
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPESWLREFCNPPLNTQELADTLTMAGLEVEELQPVAPPFTKIVVGEIKDAQQHPNAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RLRVCQVDVGQGEPLTIVCGAPNARVGIKVPCAMVGAELPPGEDGKPFLIKVGKLRGVES CEEEEEEECCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCCCCCCEEEEEECCCCCCHH FGMLCSARELKLSEDHGGLLELPADAPLGQNIRQYLNLDDTLFTLKLTPNLAHCLSVYGI HHHHHCCHHCEECCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH AREVSALTGAPLKAPQFPAMTTAIDDRLPVRVSAPDLCGRFSGRVVRNVNTQAATPQWMV HHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEECCHHHHHHCCCCEEECCCCCCCCHHHHH DRLARCGQRSVSPLVDISNYVMFEFGRPSHIFDLDKIHGGLEVRWGKAGEQLKLLNGNTV HHHHHCCCCCCCHHHCCCCEEEEEECCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCEE TVDEKVGVIADEREVESLAGIMGGDATAVSDDTRNIYVEAAFWWPEAVAGRSRRYNFSTD EECCCCCCEECHHHHHHHHHHCCCCCCEECCCCCEEEEEEEEECCHHHCCCCCCCCCCCC AGHRFERGVDPELTVEHIERITQLIVDICGTPETACAPIDDQRVNMPAQTPVRMRVARAA CCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KVIGMPLTQAQCVDALRRLGLPLQEEEGAVTVTPPSFRFDLRLEEDLIEEVARVVGYNNL HHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHHHCCCCC PTTPPLAPITPKLRAESRRSSFAVRRELAALGYQETINFSFVEEHWEKELAGNAAPIKLL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCHHHH NPIASHLSVMRSSLLGSLLQVLKFNLDRKAGRVRVFELGRVFLRDASVQNTDRTVEGFAQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHHHHH PMRVAGLAYGAADALQWGRKDKAVDFYDAKGDVEALLAPLRPTFEPAAHPALHPGRCARV HHHHHHHHHCHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHH LLEGHPIGFVGELHPQWRQSWDLPAAPMMFELELDAVLQRKVPGFRPVAKRQLVERDIAV EECCCCCCEECCCCHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHH VVAERVSQDEVMRAIGGALAGDLLRSAVLFDVFRPQPQRAGEAVPAGALAQGEKSLAIRL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHCCCCEEEEEE TLGSDAAALTDAEIEAAVQSVLQALGTHTGARLR EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MQFPESWLREFCNPPLNTQELADTLTMAGLEVEELQPVAPPFTKIVVGEIKDAQQHPNAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RLRVCQVDVGQGEPLTIVCGAPNARVGIKVPCAMVGAELPPGEDGKPFLIKVGKLRGVES CEEEEEEECCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCCCCCCEEEEEECCCCCCHH FGMLCSARELKLSEDHGGLLELPADAPLGQNIRQYLNLDDTLFTLKLTPNLAHCLSVYGI HHHHHCCHHCEECCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH AREVSALTGAPLKAPQFPAMTTAIDDRLPVRVSAPDLCGRFSGRVVRNVNTQAATPQWMV HHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEECCHHHHHHCCCCEEECCCCCCCCHHHHH DRLARCGQRSVSPLVDISNYVMFEFGRPSHIFDLDKIHGGLEVRWGKAGEQLKLLNGNTV HHHHHCCCCCCCHHHCCCCEEEEEECCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCEE TVDEKVGVIADEREVESLAGIMGGDATAVSDDTRNIYVEAAFWWPEAVAGRSRRYNFSTD EECCCCCCEECHHHHHHHHHHCCCCCCEECCCCCEEEEEEEEECCHHHCCCCCCCCCCCC AGHRFERGVDPELTVEHIERITQLIVDICGTPETACAPIDDQRVNMPAQTPVRMRVARAA CCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KVIGMPLTQAQCVDALRRLGLPLQEEEGAVTVTPPSFRFDLRLEEDLIEEVARVVGYNNL HHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHHHCCCCC PTTPPLAPITPKLRAESRRSSFAVRRELAALGYQETINFSFVEEHWEKELAGNAAPIKLL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCHHHH NPIASHLSVMRSSLLGSLLQVLKFNLDRKAGRVRVFELGRVFLRDASVQNTDRTVEGFAQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHHHHH PMRVAGLAYGAADALQWGRKDKAVDFYDAKGDVEALLAPLRPTFEPAAHPALHPGRCARV HHHHHHHHHCHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHH LLEGHPIGFVGELHPQWRQSWDLPAAPMMFELELDAVLQRKVPGFRPVAKRQLVERDIAV EECCCCCCEECCCCHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHH VVAERVSQDEVMRAIGGALAGDLLRSAVLFDVFRPQPQRAGEAVPAGALAQGEKSLAIRL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHCCCCEEEEEE TLGSDAAALTDAEIEAAVQSVLQALGTHTGARLR EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]