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The map label for this gene is ihfA [H]

Identifier: 222110652

GI number: 222110652

Start: 1522504

End: 1522854

Strand: Direct

Name: ihfA [H]

Synonym: Dtpsy_1454

Alternate gene names: 222110652

Gene position: 1522504-1522854 (Clockwise)

Preceding gene: 222110651

Following gene: 222110653

Centisome position: 40.1

GC content: 61.82

Gene sequence:

>351_bases
ATGACTCTGGGGATGGAGCCGGGGCCGGTGGAGTTCGCCGTAGAAAGCCTGGAATCGCCTGCGCTGACCAAAGCGCAGCT
GGCGGATCTGCTGTTCGAGCACATCGGCCTGAACAAGCGCGAGTCCAAGGACATGGTGGACGCCTTCTTCGACCTGATCG
TGCAAAGCCTGGTCGACGGCCAGGACGTGAAGCTGTCAGGGTTTGGCAACTTCCAGATCCGCACCAAGGCGCCGCGTCCG
GGGCGTAACCCGCGCACCGGCGAAGCCATTCCCATCAAGGCGCGACGCGTGGTGACCTTTCATGCCAGCACCAAACTCAA
GGAACAGATCCAGGGGCAGGACAAAGCTTGA

Upstream 100 bases:

>100_bases
CGCTGGGCAGCGACGCCGCCGCGTTGACGGACGCTGAGATCGAAGCCGCAGTGCAATCGGTGCTGCAGGCGCTGGGTACC
CACACAGGAGCGAGGTTGCG

Downstream 100 bases:

>100_bases
AGTAGTTGACCCGAACCGGTGTTTTTGGCCCAGAGATCCTGGCCGCCGGTAAGGGGCTGCAGTACGCTCCACAGTCTTGC
CCGTTTTTTGCGCCATTCCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTLGMEPGPVEFAVESLESPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAPRP
GRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA

Sequences:

>Translated_116_residues
MTLGMEPGPVEFAVESLESPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAPRP
GRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA
>Mature_115_residues
TLGMEPGPVEFAVESLESPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAPRPG
RNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=55.4347826086957, Blast_Score=112, Evalue=7e-27,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=36.6666666666667, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=36.6666666666667, Blast_Score=65, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12791; Mature: 12660

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGMEPGPVEFAVESLESPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDG
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
QDVKLSGFGNFQIRTKAPRPGRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA
CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCC
>Mature Secondary Structure 
TLGMEPGPVEFAVESLESPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDG
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
QDVKLSGFGNFQIRTKAPRPGRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA
CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA