Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 222110643

GI number: 222110643

Start: 1512022

End: 1512528

Strand: Direct

Name: rraA [C]

Synonym: Dtpsy_1445

Alternate gene names: 222110643

Gene position: 1512022-1512528 (Clockwise)

Preceding gene: 222110636

Following gene: 222110645

Centisome position: 39.83

GC content: 67.26

Gene sequence:

>507_bases
ATGTCTGCACACCCGACCCCGGCCATCAGCACCTGCGATCTCTGCGACGCCCACAAGGGTGACGACAGTGGCGCGTTCCG
CGTGCTGCCGCCCGTGTTCCAGAGCTACGGAGCGCTACCCTGTTTCAGCGGCCCCGTGAGCACGGTGAAATGCTTCGAGG
ACAACACGCTGGTCAAGGCGGCCGTGGATTCGCCGGGCAACGGGCGCGTGTTGGTGGTGGACGGTGGAGCTTCGCTGCGT
CGCGCGCTGGTGGGGGGCAATCTGGCAGCCAGCGCGGCGCGCAATGGCTGGGCCGGTATCGTCGTGAATGGCTGCGTGCG
CGACGTGGCAGAACTGAATGCCGAGCGCGTGGGTATCCGCGCACTCGCACTCATGCCGTTGCCCACCGAAAAGCGGGGCG
AAGGGCTTTCTGACGTGGCGGTGCAGGTACAGGGCGTGTGGGTGCGGCCGGGCGACTGGCTGTACGCGGATGCCGACGGC
ATCGTTATCAGCGACCGCGCGCTGTAA

Upstream 100 bases:

>100_bases
TTGTTGCTCTGGCGGCCAACTGCCGGCAAGCGCGAGAATGCGCCACCGCAGCTTGCTGCGGCGCACCATCCCCCTTTATG
CACAGAAAGGCTTCCCTTCC

Downstream 100 bases:

>100_bases
CGTCGCCGGTCAGGCGCGCATGTCGCGGCCGGTGCGCCATGGCAGCCGTGCGGGCATCGTGGCCAGTACGACGCTGGCCA
GTGCGATGCCAAAGGCCATG

Product: ribonuclease activity regulator protein rraa

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSAHPTPAISTCDLCDAHKGDDSGAFRVLPPVFQSYGALPCFSGPVSTVKCFEDNTLVKAAVDSPGNGRVLVVDGGASLR
RALVGGNLAASAARNGWAGIVVNGCVRDVAELNAERVGIRALALMPLPTEKRGEGLSDVAVQVQGVWVRPGDWLYADADG
IVISDRAL

Sequences:

>Translated_168_residues
MSAHPTPAISTCDLCDAHKGDDSGAFRVLPPVFQSYGALPCFSGPVSTVKCFEDNTLVKAAVDSPGNGRVLVVDGGASLR
RALVGGNLAASAARNGWAGIVVNGCVRDVAELNAERVGIRALALMPLPTEKRGEGLSDVAVQVQGVWVRPGDWLYADADG
IVISDRAL
>Mature_167_residues
SAHPTPAISTCDLCDAHKGDDSGAFRVLPPVFQSYGALPCFSGPVSTVKCFEDNTLVKAAVDSPGNGRVLVVDGGASLRR
ALVGGNLAASAARNGWAGIVVNGCVRDVAELNAERVGIRALALMPLPTEKRGEGLSDVAVQVQGVWVRPGDWLYADADGI
VISDRAL

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=44.9367088607595, Blast_Score=130, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17413; Mature: 17282

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHPTPAISTCDLCDAHKGDDSGAFRVLPPVFQSYGALPCFSGPVSTVKCFEDNTLVKA
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCEEEEECCCCEEEE
AVDSPGNGRVLVVDGGASLRRALVGGNLAASAARNGWAGIVVNGCVRDVAELNAERVGIR
EECCCCCCEEEEEECCHHHHHHHHCCCHHHHHCCCCCEEEEEHHHHHHHHHCCHHHCCEE
ALALMPLPTEKRGEGLSDVAVQVQGVWVRPGDWLYADADGIVISDRAL
EEEEECCCCHHHCCCCCCEEEEEEEEEECCCCEEEECCCCEEEECCCC
>Mature Secondary Structure 
SAHPTPAISTCDLCDAHKGDDSGAFRVLPPVFQSYGALPCFSGPVSTVKCFEDNTLVKA
CCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCEEEEECCCCEEEE
AVDSPGNGRVLVVDGGASLRRALVGGNLAASAARNGWAGIVVNGCVRDVAELNAERVGIR
EECCCCCCEEEEEECCHHHHHHHHCCCHHHHHCCCCCEEEEEHHHHHHHHHCCHHHCCEE
ALALMPLPTEKRGEGLSDVAVQVQGVWVRPGDWLYADADGIVISDRAL
EEEEECCCCHHHCCCCCCEEEEEEEEEECCCCEEEECCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA