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The map label for this gene is ompA [H]

Identifier: 222110597

GI number: 222110597

Start: 1466099

End: 1466755

Strand: Direct

Name: ompA [H]

Synonym: Dtpsy_1397

Alternate gene names: 222110597

Gene position: 1466099-1466755 (Clockwise)

Preceding gene: 222110580

Following gene: 222110598

Centisome position: 38.62

GC content: 60.12

Gene sequence:

>657_bases
ATGAAGAAACTGAACAAAGTGGCGATGTTGTTGGCCTCTGCTGTGCTTGCTACCTCGGCTGTTGCTCAAGTGAAGGCGGC
AGACGGCGGTAAGGTCATCGATAACTGGCAAAACGGCTCGGGTGAGCTGGTCTGGAAGAACGGCACGAATGAACTGTGCT
GGCGCGACGCCAACTGGACCCCCGCAACCGCTGCCGAAGGTTGCGACGGCGCTCTGGTGAAGGCTGCTGCTCCTGCTCCC
GCAGCTGCACCCGCTCCCGCAGCCGCAGCTCCTGCCGCTCCTGCCCCCGCACCTGCTATCGCTAGCAAGGTGACCTATGC
AGCCGACGCTTTCTTCGACTTCGACAAGTCCGTCCTCAAGCCCGAAGGCAAGGCCAAGTTGGACGACCTGGTTTCCAAGG
TCAAGGGCATCAACCTGGAAGTGATCATTGCCGTGGGTCACACCGACTCCATCGGTACCGACGCATACAACCAGAAGCTG
TCCGTGCGTCGCGCTGAAGCCGTGAAGGCTTACTTGGTGTCCAAGGGCATCGAAAAGAACCGCGTCTACACCGAAGGGAA
GGGCGAAAAGCAGCCCGTGGCGGACAACAAGACCAAGGAAGGTCGCGCCAAGAACCGCCGCGTGGAAATCGAAGTGGTTG
GTACCCGCGCCAACTGA

Upstream 100 bases:

>100_bases
TGTTACGTATGGCACAATCATTTCAACGTTTTTGGTGATGGTCACTGACGACGTCCCTGATTCGCAGCGCGGCTGCGGCT
TTTTCCCCAAGAGGAGAACC

Downstream 100 bases:

>100_bases
TCGATCCATCGGTCACAAAAAAGCCCCGGCAACGGGGCTTTTTTTATGCCTTGCTCGTTGCAGATGGGACAATGAAAACA
TGACTGTTTCTGTAAACGCC

Product: ompa/motb domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKKLNKVAMLLASAVLATSAVAQVKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWTPATAAEGCDGALVKAAAPAP
AAAPAPAAAAPAAPAPAPAIASKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQKL
SVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPVADNKTKEGRAKNRRVEIEVVGTRAN

Sequences:

>Translated_218_residues
MKKLNKVAMLLASAVLATSAVAQVKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWTPATAAEGCDGALVKAAAPAP
AAAPAPAAAAPAAPAPAPAIASKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQKL
SVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPVADNKTKEGRAKNRRVEIEVVGTRAN
>Mature_218_residues
MKKLNKVAMLLASAVLATSAVAQVKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWTPATAAEGCDGALVKAAAPAP
AAAPAPAAAAPAAPAPAPAIASKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQKL
SVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPVADNKTKEGRAKNRRVEIEVVGTRAN

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=125, Percent_Identity=41.6, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=37.6237623762376, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788957, Length=96, Percent_Identity=37.5, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22763; Mature: 22763

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLNKVAMLLASAVLATSAVAQVKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWT
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEECCCCCEEEECCCCC
PATAAEGCDGALVKAAAPAPAAAPAPAAAAPAAPAPAPAIASKVTYAADAFFDFDKSVLK
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHC
PEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQKLSVRRAEAVKAYLVSKGIEKN
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
RVYTEGKGEKQPVADNKTKEGRAKNRRVEIEVVGTRAN
EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MKKLNKVAMLLASAVLATSAVAQVKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWT
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEECCCCCEEEECCCCC
PATAAEGCDGALVKAAAPAPAAAPAPAAAAPAAPAPAPAIASKVTYAADAFFDFDKSVLK
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHC
PEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQKLSVRRAEAVKAYLVSKGIEKN
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
RVYTEGKGEKQPVADNKTKEGRAKNRRVEIEVVGTRAN
EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]