| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is trbE [H]
Identifier: 222110520
GI number: 222110520
Start: 1378305
End: 1380764
Strand: Direct
Name: trbE [H]
Synonym: Dtpsy_1319
Alternate gene names: 222110520
Gene position: 1378305-1380764 (Clockwise)
Preceding gene: 222110519
Following gene: 222110521
Centisome position: 36.3
GC content: 66.67
Gene sequence:
>2460_bases ATGCTGAACCTCGCCGAATATCGACAGCGTCCGGCCCTGCTCGCCGACTGGCTTCCGTGGGCCGGGCTGGTCGCGCCGGG CGTCGTCTTGAACAAGGATGGCAGTTTCCAGCGCACGGCGCGCTTTCGTGGGCCTGACCTCGACAGCGCGACGCAGGGCG AGCTGATCGCCACGTCGGCGCGCTTGAACAACGCGCTGCGCCGGCTCGGCTCGGGCTGGGCGCTCTTCATCGAGGCCGAG CGCCGGCCCGCCGCCAACTATCCGCACTCGGAGTTCCCCGAGCCTTTGTCGTGGCTGGTGGACGAGGAACGCCGGGCCAC CTTCGAGGAATCGGGCAACCACTTCGAGAGCGGTTATCACCTGACACTGGCGTACCTGCCGCCCGAGGAATCACGCGCCC GCGCGGAGGGGATGCTGTACGAGAACCGTCCCACCGAAGGCGTGGACTGGCGCGAGCGCCTGACGGCCTTCGTGGCGGAA ACGGATCGCGTCTTTGACCTGCTCGATGGCGTGATGCCGGAGATAGCCTGGATCGATGACGGGCAGACGCTGACCTACCT GCACGCGACCATCTCGACGCGGCGCTATCGAGTGGCGGTGCCCGAAGTGCCGTTTCACATCGACGCGCTGCTGGCCGATT CCGCACTGGTCGGTGGCTTGGCTCCCATGCTGGGCGAGCAGCACCTGCGCGTGGTGTCGGTGCGGGGTTTTCCGACCTCG ACCTGGCCGGGGATTCTGGGCGAACTCAACCGCCTGGGCTTTGCCTATCGCTGGAGTACGCGCTTTCTCTGCCTGGACAA AGCCGAGGCGGAAAACGAACTCACCCGCCTGCGCCGCCAATGGTTTGCCAAGCGCAAAAACGTGATGGCGCTGCTGCGCG AGACCATCTTCCAGCAGGAATCGCCGCTGGTCGATACCGACGCCAGCAACAAGGCGGCCGACGCCGATGCCGCCTTGCAG GAGCTGGGCGGCGATCAAGTCGCCTTCGGTTACCTCACCGCCACGGTGACGGTGCTCGATGCCGATCCGGCCGTGGCCGA CGAGAAGCTGCGCATGGTAGAGCGCGTCATCCAGGGCCGGGGCTTTGTGACGATTCCCGAAACCCTGAACGCGGTCGATG CTTGGCTGTCTTCGATCCCTGGCAACGCCTACGCCAATGTGCGCCAGCCCATCGTCTCGACGCTGAACCTGGCGCACATG ATGCCGGTGTCGGCGGTGTGGGCCGGGCCGGAGAAGAACGCGCACCTCGATGGCCCGCCGCTGATCGTCACGCGCACCGA CGGCGCGACGCCGTTCCGGCTGGTCACGCACATCGGCGACGTGGGCCACACGCTGGTCGCTGGCCCGACGGGCATGGGCA AGTCCGTCTTGCTCGCCATGCTGGCTATGCAGTTCCGGCGCTACTCCGGCTCGCGCATCTTTGCCTTCGACATGGGCCGC TCCATGCGCGCCACCATCCTCGGGCTGGGCGGCGAGCACTACGACCTGGGTGCCGATGGCGAAATTGCCTTCCAGCCGCT CGCGCGCATCGACCGCGAGGGCTACCGCACCTGGGCCGCTGAATGGATCGAAGGCAGACTACTACATGAAGGCGTGGCGG TCGGCCCCGATGAGAAGGTCGCAATCTGGTCGGCGCTGGGAAGCCTCGCCGGTGCGCCGCTGGAGCAGCGCACCGTGACC GGGCTTTCCGTGCTGCTGCAATCGAACGCGCTGCGCCAGGCCCTCGCGCCCTATGTGCTCGGTGGCGCCCACGGCAGGCT TCTGGACGCCGACCATGACCAGCTGGGCATGGCCGACGTGCAGTGCTTCGAGATGGAGGAACTGATGCACAGCAAGGCCG CCGTCATGGCCGTGCTGGGCTATCTGTTCGCGCGCTTCGACGAACGCTTCGACGGTGCGCCCACGCTGCTGATGCTCGAT GAGGCGTGGCTGTTTCTCGATGACCTGGTATTCGCGGCACGCATCCGGCAGTGGCTCAAGACGCTGCGCAAGAAGAACGT GTCGGTGATCTTCGCTACGCAGAGCCTTGCCGACATCAAGGATTCGAGCATTGCGCCCGCGATCATCGAAAGCTGCGCCA GCCGCATTTTCCTGCCCAACCCGCAGGCCACCGAGCCGCAGATTCGCACGATCTACGAGGGCTTCGGGTTGAACTCGCGC CAGATCGAGATCGTGGCGACCGCGCAGCCCAAGCGCGACTACTACTACCAGTCCCGCCTCGGCAATCGCCTGTTCGACCT CGACCTGGGGCCGGCCACGCTGGCCTTTGCGGGCGCTTCCACGCCGCAGGACCAGCGCGACATGGATCGCGTGTTGCTGG ATGCCGGCGTGACCGGCTTCGCGGGCGCCTGGCTGCGCCATCGCAGGCTCGATTGGGCGGCCGACCTGCTGCCCTCACTC CCCGGACTTGCGCCGGGTTCCTCTCGTACCGCTGACCACCCACAGGAGAACCAGCCATGA
Upstream 100 bases:
>100_bases TCGCTGGCGGTCTGGGGTGCGCGCGTCGATCCGCAGTTCATGCAGGTCTTTGCGCGGCACATCAAGCACAAGCCGCTGCT GGACGTGTGAGGGGAATGCC
Downstream 100 bases:
>100_bases AGACCCATGCGCTTTCCATTTCGCTCGCCGCCGCGTTGTCGCTCTCGCTGTTGACCTCGTCACCAGCGTTGGCCTGGCGC ATCGTCTTTGATCCGACCAA
Product: conjugal transfer ATPase Trbe
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAANYPHSEFPEPLSWLVDEERRATFEESGNHFESGYHLTLAYLPPEESRARAEGMLYENRPTEGVDWRERLTAFVAE TDRVFDLLDGVMPEIAWIDDGQTLTYLHATISTRRYRVAVPEVPFHIDALLADSALVGGLAPMLGEQHLRVVSVRGFPTS TWPGILGELNRLGFAYRWSTRFLCLDKAEAENELTRLRRQWFAKRKNVMALLRETIFQQESPLVDTDASNKAADADAALQ ELGGDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAMLAMQFRRYSGSRIFAFDMGR SMRATILGLGGEHYDLGADGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPDEKVAIWSALGSLAGAPLEQRTVT GLSVLLQSNALRQALAPYVLGGAHGRLLDADHDQLGMADVQCFEMEELMHSKAAVMAVLGYLFARFDERFDGAPTLLMLD EAWLFLDDLVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGVTGFAGAWLRHRRLDWAADLLPSL PGLAPGSSRTADHPQENQP
Sequences:
>Translated_819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAANYPHSEFPEPLSWLVDEERRATFEESGNHFESGYHLTLAYLPPEESRARAEGMLYENRPTEGVDWRERLTAFVAE TDRVFDLLDGVMPEIAWIDDGQTLTYLHATISTRRYRVAVPEVPFHIDALLADSALVGGLAPMLGEQHLRVVSVRGFPTS TWPGILGELNRLGFAYRWSTRFLCLDKAEAENELTRLRRQWFAKRKNVMALLRETIFQQESPLVDTDASNKAADADAALQ ELGGDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAMLAMQFRRYSGSRIFAFDMGR SMRATILGLGGEHYDLGADGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPDEKVAIWSALGSLAGAPLEQRTVT GLSVLLQSNALRQALAPYVLGGAHGRLLDADHDQLGMADVQCFEMEELMHSKAAVMAVLGYLFARFDERFDGAPTLLMLD EAWLFLDDLVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGVTGFAGAWLRHRRLDWAADLLPSL PGLAPGSSRTADHPQENQP >Mature_819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAANYPHSEFPEPLSWLVDEERRATFEESGNHFESGYHLTLAYLPPEESRARAEGMLYENRPTEGVDWRERLTAFVAE TDRVFDLLDGVMPEIAWIDDGQTLTYLHATISTRRYRVAVPEVPFHIDALLADSALVGGLAPMLGEQHLRVVSVRGFPTS TWPGILGELNRLGFAYRWSTRFLCLDKAEAENELTRLRRQWFAKRKNVMALLRETIFQQESPLVDTDASNKAADADAALQ ELGGDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAMLAMQFRRYSGSRIFAFDMGR SMRATILGLGGEHYDLGADGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPDEKVAIWSALGSLAGAPLEQRTVT GLSVLLQSNALRQALAPYVLGGAHGRLLDADHDQLGMADVQCFEMEELMHSKAAVMAVLGYLFARFDERFDGAPTLLMLD EAWLFLDDLVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGVTGFAGAWLRHRRLDWAADLLPSL PGLAPGSSRTADHPQENQP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 90430; Mature: 90430
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRPAANYPHSEFPEPLSWLVDEERRATFEESGNHFESGYH HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCEECCCEE LTLAYLPPEESRARAEGMLYENRPTEGVDWRERLTAFVAETDRVFDLLDGVMPEIAWIDD EEEEEECCCHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC GQTLTYLHATISTRRYRVAVPEVPFHIDALLADSALVGGLAPMLGEQHLRVVSVRGFPTS CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC TWPGILGELNRLGFAYRWSTRFLCLDKAEAENELTRLRRQWFAKRKNVMALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAALQELGGDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPVSAVWAGPEKNAHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAMLAMQFRRYSGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGADGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPDEKV CCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCH AIWSALGSLAGAPLEQRTVTGLSVLLQSNALRQALAPYVLGGAHGRLLDADHDQLGMADV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHH QCFEMEELMHSKAAVMAVLGYLFARFDERFDGAPTLLMLDEAWLFLDDLVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGVTGF EEEEEEECCCCHHHHHHHHHCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHH AGAWLRHRRLDWAADLLPSLPGLAPGSSRTADHPQENQP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRPAANYPHSEFPEPLSWLVDEERRATFEESGNHFESGYH HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCEECCCEE LTLAYLPPEESRARAEGMLYENRPTEGVDWRERLTAFVAETDRVFDLLDGVMPEIAWIDD EEEEEECCCHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC GQTLTYLHATISTRRYRVAVPEVPFHIDALLADSALVGGLAPMLGEQHLRVVSVRGFPTS CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC TWPGILGELNRLGFAYRWSTRFLCLDKAEAENELTRLRRQWFAKRKNVMALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAALQELGGDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPVSAVWAGPEKNAHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAMLAMQFRRYSGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGADGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPDEKV CCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCH AIWSALGSLAGAPLEQRTVTGLSVLLQSNALRQALAPYVLGGAHGRLLDADHDQLGMADV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHH QCFEMEELMHSKAAVMAVLGYLFARFDERFDGAPTLLMLDEAWLFLDDLVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGVTGF EEEEEEECCCCHHHHHHHHHCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHH AGAWLRHRRLDWAADLLPSLPGLAPGSSRTADHPQENQP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]