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The map label for this gene is skp [H]

Identifier: 222110435

GI number: 222110435

Start: 1295489

End: 1296010

Strand: Direct

Name: skp [H]

Synonym: Dtpsy_1232

Alternate gene names: 222110435

Gene position: 1295489-1296010 (Clockwise)

Preceding gene: 222110434

Following gene: 222110436

Centisome position: 34.12

GC content: 63.41

Gene sequence:

>522_bases
ATGAAATCCCTTTCCCGCCACATTCCCCTGGTCGTCCTGTTGGGCTCCCTGGCTGCCGCCGTGCCTGCACAGGCACAGGA
GTTCAGGGCCGGCTTTGTGAATACCGACCGCATCTTCCGCGAAGCCAACACCGCCAAGGCGGCGCAGGCCAAGCTGGAGC
AGGAGTTCTCCCGCCGGGAGAAAGAACTGGTGGACATGGGCAATTCGCTCAAGTCCGCCACCGAGAAGTTTGAGCGTGAG
GCGCCCACGATGGCCGAGAGCCAGCGCACCGCACGGCAACGCCAACTGGTGGACCAGGACCGCGAATTCCAGCGCAAGCG
CCGCGAATTCCAGGAGGACCTGGGCGCGCGCAAGAACGAGGAGCTGGGCCAGGTGCTCGAGCGCGCGAACCGCGTCGTCA
AGCAGGTGGCCGAGCAGGAGAAGTACGACGTGATCCTGCAGGAGGCCGTCTACATCAATCCCAAGCACGACATCACCGAC
AAGGTGATCAAGGCGATGAACGCTGCCAACGGCGGCAAGTAA

Upstream 100 bases:

>100_bases
CCCCGCTGGGCCCGCTACGTATCGCCATCGCGCAACCGGTGCGCAAGTTCGCCGGCGATAAAATCCAGAAACTGCAATTC
CAGATCGGAACGTCTTTCTA

Downstream 100 bases:

>100_bases
AGCACCGGCACGGGGCAGTAGCGCGTGAGCTTGCGACTCGGGCAGATCGTCGATGCACTTGGGGGCAGCCTGGAAGGAGG
GGAGAGGGATACCGAAATCC

Product: outer membrane chaperone Skp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKSLSRHIPLVVLLGSLAAAVPAQAQEFRAGFVNTDRIFREANTAKAAQAKLEQEFSRREKELVDMGNSLKSATEKFERE
APTMAESQRTARQRQLVDQDREFQRKRREFQEDLGARKNEELGQVLERANRVVKQVAEQEKYDVILQEAVYINPKHDITD
KVIKAMNAANGGK

Sequences:

>Translated_173_residues
MKSLSRHIPLVVLLGSLAAAVPAQAQEFRAGFVNTDRIFREANTAKAAQAKLEQEFSRREKELVDMGNSLKSATEKFERE
APTMAESQRTARQRQLVDQDREFQRKRREFQEDLGARKNEELGQVLERANRVVKQVAEQEKYDVILQEAVYINPKHDITD
KVIKAMNAANGGK
>Mature_173_residues
MKSLSRHIPLVVLLGSLAAAVPAQAQEFRAGFVNTDRIFREANTAKAAQAKLEQEFSRREKELVDMGNSLKSATEKFERE
APTMAESQRTARQRQLVDQDREFQRKRREFQEDLGARKNEELGQVLERANRVVKQVAEQEKYDVILQEAVYINPKHDITD
KVIKAMNAANGGK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19711; Mature: 19711

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLSRHIPLVVLLGSLAAAVPAQAQEFRAGFVNTDRIFREANTAKAAQAKLEQEFSRRE
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELVDMGNSLKSATEKFEREAPTMAESQRTARQRQLVDQDREFQRKRREFQEDLGARKNE
HHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ELGQVLERANRVVKQVAEQEKYDVILQEAVYINPKHDITDKVIKAMNAANGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSLSRHIPLVVLLGSLAAAVPAQAQEFRAGFVNTDRIFREANTAKAAQAKLEQEFSRRE
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELVDMGNSLKSATEKFEREAPTMAESQRTARQRQLVDQDREFQRKRREFQEDLGARKNE
HHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ELGQVLERANRVVKQVAEQEKYDVILQEAVYINPKHDITDKVIKAMNAANGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]