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The map label for this gene is scpB [H]

Identifier: 222110297

GI number: 222110297

Start: 1132036

End: 1132740

Strand: Direct

Name: scpB [H]

Synonym: Dtpsy_1084

Alternate gene names: 222110297

Gene position: 1132036-1132740 (Clockwise)

Preceding gene: 222110296

Following gene: 222110298

Centisome position: 29.82

GC content: 60.28

Gene sequence:

>705_bases
ATGAATTCGGTGGACGCCAAACGGGTTCTTGAAACCGCGTTGATCTGTGCCCCGCAGCCTGTATCGATCCGTGACTTGCG
GACATTGTTCGATGACGCGCTGGGTTCCGATACAGTAAAGATGCTGCTGCTGGAACTGCAGCAGGACTGGGCCTTGCGAG
GGGTGGAGTTGGTACAAGTGGCCACAGGTTGGCGTTTCCAGAGCCGGCCCGAGATGCGTGAATTTCTGGACCGGCTGCAT
CCTGAAAAGCCGCCCCGCTACACGCGAGCGACGCTGGAGACGCTGGCCATCATTGCGTACCGGCAGCCCGTGACCCGCGG
GGACATCGAAGACATCCGTGGGGTGACGGTCAACAGCCTCATCATCAAACAACTGGAGGACCGCGGCTGGGTGGAGGTCA
TTGGCCACCGCGAGACAGTGGGCCGGCCTGCGTTGTTTGCTACCACACGGCAGTTCCTGGACGATTTAGGACTGCAATCA
CTGGATCAACTGCCTACGCTCGAAGACCCCGGCGTGCAGGTCAGCATGTTTGAAGCGCTGGGCGCCATTCAGGGGGCACC
GCAGAGCGAAGACACTGCAGGGGTACCTGAGGACGGCGTGCAGGTGCCGGCCGTAGACGAAGTAGATATTGAAGATGCCC
CTGATCTGGTAGTGGGCGCGACACACAGTGGTGCCGAAGAGGGGCCACGGGACATTGACATATGA

Upstream 100 bases:

>100_bases
AGGCGCATTGCCACGCTCTGCTTTCTGCGCCGCAATATCTCCAACCCAAGGCGCAGCCTCCCGTTTGATGCGAGGCTGCC
TTTCCAGGGACTGTTGGACC

Downstream 100 bases:

>100_bases
ATGATGAATCTCACAAGGATCCGGACTCCATGGCGGGTCACTCGCCTTTGCCCGCATCGGAGGCTGCTGCGCCGCGCGGG
CCCCGCAAGCGCAAGTCTGC

Product: chromosome segregation and condensation protein ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNSVDAKRVLETALICAPQPVSIRDLRTLFDDALGSDTVKMLLLELQQDWALRGVELVQVATGWRFQSRPEMREFLDRLH
PEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSLIIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLQS
LDQLPTLEDPGVQVSMFEALGAIQGAPQSEDTAGVPEDGVQVPAVDEVDIEDAPDLVVGATHSGAEEGPRDIDI

Sequences:

>Translated_234_residues
MNSVDAKRVLETALICAPQPVSIRDLRTLFDDALGSDTVKMLLLELQQDWALRGVELVQVATGWRFQSRPEMREFLDRLH
PEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSLIIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLQS
LDQLPTLEDPGVQVSMFEALGAIQGAPQSEDTAGVPEDGVQVPAVDEVDIEDAPDLVVGATHSGAEEGPRDIDI
>Mature_234_residues
MNSVDAKRVLETALICAPQPVSIRDLRTLFDDALGSDTVKMLLLELQQDWALRGVELVQVATGWRFQSRPEMREFLDRLH
PEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSLIIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLQS
LDQLPTLEDPGVQVSMFEALGAIQGAPQSEDTAGVPEDGVQVPAVDEVDIEDAPDLVVGATHSGAEEGPRDIDI

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25829; Mature: 25829

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVDAKRVLETALICAPQPVSIRDLRTLFDDALGSDTVKMLLLELQQDWALRGVELVQV
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
ATGWRFQSRPEMREFLDRLHPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSL
HHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
IIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLQSLDQLPTLEDPGVQVSMFEAL
HHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEHHHHHH
GAIQGAPQSEDTAGVPEDGVQVPAVDEVDIEDAPDLVVGATHSGAEEGPRDIDI
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSVDAKRVLETALICAPQPVSIRDLRTLFDDALGSDTVKMLLLELQQDWALRGVELVQV
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
ATGWRFQSRPEMREFLDRLHPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSL
HHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
IIKQLEDRGWVEVIGHRETVGRPALFATTRQFLDDLGLQSLDQLPTLEDPGVQVSMFEAL
HHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEHHHHHH
GAIQGAPQSEDTAGVPEDGVQVPAVDEVDIEDAPDLVVGATHSGAEEGPRDIDI
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]