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The map label for this gene is 222110275

Identifier: 222110275

GI number: 222110275

Start: 1105009

End: 1105488

Strand: Direct

Name: 222110275

Synonym: Dtpsy_1062

Alternate gene names: NA

Gene position: 1105009-1105488 (Clockwise)

Preceding gene: 222110266

Following gene: 222110276

Centisome position: 29.11

GC content: 65.62

Gene sequence:

>480_bases
ATGCCCTTTTGGTTTTGGACGTCAACAAGAAAGGCTTTCATGAAAAAGACATCTCTCACGATGGCGCTGGCCGCCGCAAC
CCTGCTGCTCGCCGCCTGTGGCAAAAACGACGCTCCGGCGCCCGCGCCTGCTCCTGCACCCGCTGCGCAAGCACCGGCTC
CCGCGCCTACCCCTGCTCCCGCGCCAGCCGCTCAAGCACCTGCCGCCGCCCCCGCGACGGCGGAGAACACCGTCGGTAAG
AGCGTGTACGGCAAAACCTGCGCGATGTGCCATGCGGCCGGCGTTGCAGGGGCTCCCAAGCCTGGCGATAAGGCCGATTG
GGCGCCGCGTATTGCCCAGGGCAAGGACACGCTCTACAAGCACGCCATCGAAGGCTTCACCGGCAGCAAGGGCATGATGC
CCGCGCGCGGCGGCGCGGCTTCGCTGAGCGACGATGAAGTGAAGGCCGCCGTGGATTTCATGGCTGACCAGTCGATGTAA

Upstream 100 bases:

>100_bases
GTTTCTTTCGATGTTGATTTACATCAAATGAATGATTCTGGAAACTACCAAACTGACGACCCATTGAAGGGCAGGCTCGT
TGCATGGGGCGCAGGCTAAG

Downstream 100 bases:

>100_bases
GGACCGGAGGGGCTCGCGATGAATTCAGATCGGTGCATGCCGGCGGTAGGCAACCGGTGGACGCGGCGGCGCTTCGCCCT
TGCGCTGCCGTTGCTGGGCG

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MPFWFWTSTRKAFMKKTSLTMALAAATLLLAACGKNDAPAPAPAPAPAAQAPAPAPTPAPAPAAQAPAAAPATAENTVGK
SVYGKTCAMCHAAGVAGAPKPGDKADWAPRIAQGKDTLYKHAIEGFTGSKGMMPARGGAASLSDDEVKAAVDFMADQSM

Sequences:

>Translated_159_residues
MPFWFWTSTRKAFMKKTSLTMALAAATLLLAACGKNDAPAPAPAPAPAAQAPAPAPTPAPAPAAQAPAAAPATAENTVGK
SVYGKTCAMCHAAGVAGAPKPGDKADWAPRIAQGKDTLYKHAIEGFTGSKGMMPARGGAASLSDDEVKAAVDFMADQSM
>Mature_158_residues
PFWFWTSTRKAFMKKTSLTMALAAATLLLAACGKNDAPAPAPAPAPAAQAPAPAPTPAPAPAAQAPAAAPATAENTVGKS
VYGKTCAMCHAAGVAGAPKPGDKADWAPRIAQGKDTLYKHAIEGFTGSKGMMPARGGAASLSDDEVKAAVDFMADQSM

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 15981; Mature: 15850

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFWFWTSTRKAFMKKTSLTMALAAATLLLAACGKNDAPAPAPAPAPAAQAPAPAPTPAP
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAAQAPAAAPATAENTVGKSVYGKTCAMCHAAGVAGAPKPGDKADWAPRIAQGKDTLYK
CCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHH
HAIEGFTGSKGMMPARGGAASLSDDEVKAAVDFMADQSM
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PFWFWTSTRKAFMKKTSLTMALAAATLLLAACGKNDAPAPAPAPAPAAQAPAPAPTPAP
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAAQAPAAAPATAENTVGKSVYGKTCAMCHAAGVAGAPKPGDKADWAPRIAQGKDTLYK
CCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHH
HAIEGFTGSKGMMPARGGAASLSDDEVKAAVDFMADQSM
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]