| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is ttuD [H]
Identifier: 222110255
GI number: 222110255
Start: 1083205
End: 1084527
Strand: Direct
Name: ttuD [H]
Synonym: Dtpsy_1042
Alternate gene names: 222110255
Gene position: 1083205-1084527 (Clockwise)
Preceding gene: 222110254
Following gene: 222110256
Centisome position: 28.53
GC content: 72.41
Gene sequence:
>1323_bases ATGACCATGACAGCCCCAGACCCCTTGCGAGACCCTCAAGCCTTCCTGCTGCACCTCTACCGCGTGGCGGTGCAGCGCGC CCAGCCCTTGCACAGCATGGCGCAGCATCTGCCGCCGCCACCCAAGGGGCGCACCGTGGTGCTGGGCGCGGGCAAGGCGG GTGCCTCCATGGCGCAGGCGCTGGAGGCGCTGTGGCCGCAGGATGCACCGCTGTCGGGGCTGGTGGTCACGCGCTACGGC CACATACCGCCGCGGCCCGAGGGGTTGGCGCAGCGCCTGGAAGTCGTCGAGGCCGCGCACCCCGTGCCCGACGCGGCGGG CCTGGCCGCGGCCGAGCGCATCCTGGCGCTGACCCGAGGGCTGACCGAAGACGACCTGGTGCTGTGTCTCATCTCGGGCG GTGGCTCGGCGCTGCTCACGCTGCCGGCCGAAGGCATCACGCTGGAGGAGAAGCAACGCATCAACCGCGCACTGCTGGAA AGCGGCGCGGCCATCGGCGAGATGAACTGCGTGCGCAAGCACCTCTCGCGCATCAAGGGCGGTCGCCTGGCGGCAGCCTG CGCGCCGGCGCGCGTCGTCACGCTGACCATCAGCGATGTGCCGGGGGACGACCCTTCCGTGATCGCCAGCGGCCCCACGG TCCCCGACGCCAGCACCTGCGCTGACGCGCTGGACATCCTGGCGCGCTACCGCATCGACATTCCCGCCGCCGTGCACACA GCGCTGCAGGCCGGTGCACTGGAAACCCCCAAGCTCGGCGATGTCCGCTTTGCCGGCCATGCGGTGCACATGATCGCGAC GCCCCAGCAGTCGCTGCAGGCAGCGGCGGATGCGGCGCGCGCGGCGGGGGTGGCGGCGTACATCCTGTCCGACGAGATGG AGGGCGAGTCGCGCGAGGTGGGCAAGGTGCACGCCGCGCTGGCGCGTGCGGTGGCGCGCCACGGCCAGCCGTTTTCGCGG CCGTGCGTGATTCTTTCGGGCGGCGAGACCACCGTCACCGTGCGCCCGCGCGCCCCGGGCGCGCCGAAGGGGCGCGGCGG CCGCGCGGGCGAGTTCTGCATGGGCCTGGCGCAGGCGCTGCAGGGGCAGGAAGGGGTGTGGGCGCTGGCGGCCGATACCG ACGGCATCGACGGCGTGGAAGACAACGCCGGCGCACGCGTGGCACCCGACACGCTGGCGCGCGCGGCGGCGCAGGGCGCA CGCATCGGCGACCATCTAGACCGCAACGACGCCTACGGCTACTTCGAGCGGCTGGGCGATCTGGTCGTCACGGGGCCCAC GCACACCAATGTGAACGACTTCCGCGCGCTACTTGTTTTGTAG
Upstream 100 bases:
>100_bases CTTTGCGCGACTGGTCAAGGAAGCCAAGGTTTCGCTGGATGGACGGTAGGGCTTGTGCCGGCCGCGTGCTTTGGATAATG CGCGGCGGAGACAACGACCC
Downstream 100 bases:
>100_bases CTTGCCGCGCCTGCTGTTGCTGGATTTCAGATACGAATGCATCTGAATGCGGCTTCTATCAGGCGCTGGCAGCTCACTTT TTTGATCTGCTGGCGCGGGC
Product: hydroxypyruvate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MTMTAPDPLRDPQAFLLHLYRVAVQRAQPLHSMAQHLPPPPKGRTVVLGAGKAGASMAQALEALWPQDAPLSGLVVTRYG HIPPRPEGLAQRLEVVEAAHPVPDAAGLAAAERILALTRGLTEDDLVLCLISGGGSALLTLPAEGITLEEKQRINRALLE SGAAIGEMNCVRKHLSRIKGGRLAAACAPARVVTLTISDVPGDDPSVIASGPTVPDASTCADALDILARYRIDIPAAVHT ALQAGALETPKLGDVRFAGHAVHMIATPQQSLQAAADAARAAGVAAYILSDEMEGESREVGKVHAALARAVARHGQPFSR PCVILSGGETTVTVRPRAPGAPKGRGGRAGEFCMGLAQALQGQEGVWALAADTDGIDGVEDNAGARVAPDTLARAAAQGA RIGDHLDRNDAYGYFERLGDLVVTGPTHTNVNDFRALLVL
Sequences:
>Translated_440_residues MTMTAPDPLRDPQAFLLHLYRVAVQRAQPLHSMAQHLPPPPKGRTVVLGAGKAGASMAQALEALWPQDAPLSGLVVTRYG HIPPRPEGLAQRLEVVEAAHPVPDAAGLAAAERILALTRGLTEDDLVLCLISGGGSALLTLPAEGITLEEKQRINRALLE SGAAIGEMNCVRKHLSRIKGGRLAAACAPARVVTLTISDVPGDDPSVIASGPTVPDASTCADALDILARYRIDIPAAVHT ALQAGALETPKLGDVRFAGHAVHMIATPQQSLQAAADAARAAGVAAYILSDEMEGESREVGKVHAALARAVARHGQPFSR PCVILSGGETTVTVRPRAPGAPKGRGGRAGEFCMGLAQALQGQEGVWALAADTDGIDGVEDNAGARVAPDTLARAAAQGA RIGDHLDRNDAYGYFERLGDLVVTGPTHTNVNDFRALLVL >Mature_439_residues TMTAPDPLRDPQAFLLHLYRVAVQRAQPLHSMAQHLPPPPKGRTVVLGAGKAGASMAQALEALWPQDAPLSGLVVTRYGH IPPRPEGLAQRLEVVEAAHPVPDAAGLAAAERILALTRGLTEDDLVLCLISGGGSALLTLPAEGITLEEKQRINRALLES GAAIGEMNCVRKHLSRIKGGRLAAACAPARVVTLTISDVPGDDPSVIASGPTVPDASTCADALDILARYRIDIPAAVHTA LQAGALETPKLGDVRFAGHAVHMIATPQQSLQAAADAARAAGVAAYILSDEMEGESREVGKVHAALARAVARHGQPFSRP CVILSGGETTVTVRPRAPGAPKGRGGRAGEFCMGLAQALQGQEGVWALAADTDGIDGVEDNAGARVAPDTLARAAAQGAR IGDHLDRNDAYGYFERLGDLVVTGPTHTNVNDFRALLVL
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=395, Percent_Identity=36.9620253164557, Blast_Score=174, Evalue=1e-43, Organism=Caenorhabditis elegans, GI193205461, Length=422, Percent_Identity=29.3838862559242, Blast_Score=151, Evalue=6e-37, Organism=Drosophila melanogaster, GI19920578, Length=391, Percent_Identity=31.2020460358056, Blast_Score=128, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 45719; Mature: 45588
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTAPDPLRDPQAFLLHLYRVAVQRAQPLHSMAQHLPPPPKGRTVVLGAGKAGASMAQA CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH LEALWPQDAPLSGLVVTRYGHIPPRPEGLAQRLEVVEAAHPVPDAAGLAAAERILALTRG HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LTEDDLVLCLISGGGSALLTLPAEGITLEEKQRINRALLESGAAIGEMNCVRKHLSRIKG CCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC GRLAAACAPARVVTLTISDVPGDDPSVIASGPTVPDASTCADALDILARYRIDIPAAVHT CCEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH ALQAGALETPKLGDVRFAGHAVHMIATPQQSLQAAADAARAAGVAAYILSDEMEGESREV HHHHCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHH GKVHAALARAVARHGQPFSRPCVILSGGETTVTVRPRAPGAPKGRGGRAGEFCMGLAQAL HHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH QGQEGVWALAADTDGIDGVEDNAGARVAPDTLARAAAQGARIGDHLDRNDAYGYFERLGD CCCCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC LVVTGPTHTNVNDFRALLVL EEEECCCCCCHHHHHEEEEC >Mature Secondary Structure TMTAPDPLRDPQAFLLHLYRVAVQRAQPLHSMAQHLPPPPKGRTVVLGAGKAGASMAQA CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH LEALWPQDAPLSGLVVTRYGHIPPRPEGLAQRLEVVEAAHPVPDAAGLAAAERILALTRG HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LTEDDLVLCLISGGGSALLTLPAEGITLEEKQRINRALLESGAAIGEMNCVRKHLSRIKG CCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC GRLAAACAPARVVTLTISDVPGDDPSVIASGPTVPDASTCADALDILARYRIDIPAAVHT CCEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH ALQAGALETPKLGDVRFAGHAVHMIATPQQSLQAAADAARAAGVAAYILSDEMEGESREV HHHHCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHH GKVHAALARAVARHGQPFSRPCVILSGGETTVTVRPRAPGAPKGRGGRAGEFCMGLAQAL HHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH QGQEGVWALAADTDGIDGVEDNAGARVAPDTLARAAAQGARIGDHLDRNDAYGYFERLGD CCCCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC LVVTGPTHTNVNDFRALLVL EEEECCCCCCHHHHHEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]