| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222110148
Identifier: 222110148
GI number: 222110148
Start: 959520
End: 960983
Strand: Direct
Name: 222110148
Synonym: Dtpsy_0934
Alternate gene names: NA
Gene position: 959520-960983 (Clockwise)
Preceding gene: 222110147
Following gene: 222110149
Centisome position: 25.27
GC content: 67.55
Gene sequence:
>1464_bases ATGCAGCAGTTCGACGAGATGTACACCGTGCTGCCCTTCGGGGGCAGCGACGTGCGGGCGCACTACCGGCATTACGGCCA GTGGCTGGCGCAGCAGCCGGCCGATGCCATGCAGGCCCGCCGCGCGCAGGCCGAGGTGATCTTCCGCCGCGTGGGCATCA CCTTCGCCGTGTATGGCGACAAGGACGAGGAGGGCGCCGGGACCGAGCGGCTGATCCCCTTCGACCTGATTCCGCGCATC ATCCCCGCGCAGGAATGGCGCCGCATGCGGCGCGGCCTGGTGCAGCGCGTCACGGCGCTCAACCGCTTCATCCACGACAT CTACCACGGCCAGGACATCCTGCGCGCAGGCATCGTGCCTGCCGACCTGATCCTGGCCAATGCGCAGTTCCGTCCCGAGA TGGTGGGCCTGGACGTCCCGCAGGACGTGTACGCGCACATCGCGGGCATCGACCTCGTGCGCGCGCCGGGCGCGGATGGC GAGGGCATCCACTACGTGCTGGAGGACAACCTGCGCGTGCCGTCCGGCGTGTCATACATGCTGGAAAACCGCAAGATGAT GATGCGGCTGTTTCCCGAGCTGTTTGCGCTGCACAAGGTGGCCCCCGTGGCGCACTATCCCGACCTGCTGCTGGACACGC TGCGTGCCAGCGCGCCGGCCTGGAGCAGCGCCGACCCCACCGTGGTGGTGCTCACGCCCGGCATGCACAACAGCGCCTAT TTCGAGCACGCCTTCCTCGCGCAGCAGATGGGCGTGGAGCTGGTCGAAGGCCAGGACCTGGTCGTCAAGGACAACGTCGT CTACATGCGCACCACGCGCGGCCTGCAGCGCGTGCATGTCATCTACCGGCGCGTGGATGACGACTTCCTCGACCCACAGG TGTTCCGGCCCACCTCCACACTGGGCTGCGCGGGGCTCATGCAGGCCTACCGCGCGGGCAACGTGGCCATTTGCAACGCC GTGGGTACAGGCATTGCGGACGACAAGTCGGTGTACCCGTACGTGCCCGAGATGATCCGCTTTTACCTGGGCGAGCAGCC CATCCTGGCCAACGTGCCCACCTGGATGTGCCGCCGCCCTGAAGACCTGCAGTACGTGCTGGGGCATCTGCCGGAGCTGG TGGTCAAGGAAGTGCACGGCGCGGGCGGCTACGGCATGCTCATCGGACCCGCGGCCACGCGCGCCGAGATCGAGGACTTC CGCGCCGCGCTCCTCGCTAATCCCGCGGGCTACATCGCCCAGCCCACGCTCTCGCTCTCGACCTGTCCTACCTACGTGGA TGCGGGCATCGCGCCGCGCCACATCGATCTGCGGCCCTTCGTGCTCAGTGGACAGAAAGTGCAGATGGTGGCCGGCGGGC TCACGCGCGTGGCGCTCAAGGAGGGCTCGCTCGTCGTCAACTCGTCGCAGGGTGGCGGCACCAAGGACACCTGGGTGCTG GGAGATGAGGATGGAGGTCAATGA
Upstream 100 bases:
>100_bases GCGCTACTGGCACCACCGCGTGTCCGAGGCGTCACTTTTGCCGCAGCCGTAGCGTTGCCGGGCCTGCAACTTGCTATCCT GGGTGCAGGAGGCACGCCGC
Downstream 100 bases:
>100_bases GATGCTGAGCCGCACTGCCGACCATCTGTTCTGGATGTCCCGCTACACCGAGCGGGCAGACAGGTCCGCCGCAGGCGGGC TTGCGCCACAACACGGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 487
Protein sequence:
>487_residues MQQFDEMYTVLPFGGSDVRAHYRHYGQWLAQQPADAMQARRAQAEVIFRRVGITFAVYGDKDEEGAGTERLIPFDLIPRI IPAQEWRRMRRGLVQRVTALNRFIHDIYHGQDILRAGIVPADLILANAQFRPEMVGLDVPQDVYAHIAGIDLVRAPGADG EGIHYVLEDNLRVPSGVSYMLENRKMMMRLFPELFALHKVAPVAHYPDLLLDTLRASAPAWSSADPTVVVLTPGMHNSAY FEHAFLAQQMGVELVEGQDLVVKDNVVYMRTTRGLQRVHVIYRRVDDDFLDPQVFRPTSTLGCAGLMQAYRAGNVAICNA VGTGIADDKSVYPYVPEMIRFYLGEQPILANVPTWMCRRPEDLQYVLGHLPELVVKEVHGAGGYGMLIGPAATRAEIEDF RAALLANPAGYIAQPTLSLSTCPTYVDAGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVL GDEDGGQ
Sequences:
>Translated_487_residues MQQFDEMYTVLPFGGSDVRAHYRHYGQWLAQQPADAMQARRAQAEVIFRRVGITFAVYGDKDEEGAGTERLIPFDLIPRI IPAQEWRRMRRGLVQRVTALNRFIHDIYHGQDILRAGIVPADLILANAQFRPEMVGLDVPQDVYAHIAGIDLVRAPGADG EGIHYVLEDNLRVPSGVSYMLENRKMMMRLFPELFALHKVAPVAHYPDLLLDTLRASAPAWSSADPTVVVLTPGMHNSAY FEHAFLAQQMGVELVEGQDLVVKDNVVYMRTTRGLQRVHVIYRRVDDDFLDPQVFRPTSTLGCAGLMQAYRAGNVAICNA VGTGIADDKSVYPYVPEMIRFYLGEQPILANVPTWMCRRPEDLQYVLGHLPELVVKEVHGAGGYGMLIGPAATRAEIEDF RAALLANPAGYIAQPTLSLSTCPTYVDAGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVL GDEDGGQ >Mature_487_residues MQQFDEMYTVLPFGGSDVRAHYRHYGQWLAQQPADAMQARRAQAEVIFRRVGITFAVYGDKDEEGAGTERLIPFDLIPRI IPAQEWRRMRRGLVQRVTALNRFIHDIYHGQDILRAGIVPADLILANAQFRPEMVGLDVPQDVYAHIAGIDLVRAPGADG EGIHYVLEDNLRVPSGVSYMLENRKMMMRLFPELFALHKVAPVAHYPDLLLDTLRASAPAWSSADPTVVVLTPGMHNSAY FEHAFLAQQMGVELVEGQDLVVKDNVVYMRTTRGLQRVHVIYRRVDDDFLDPQVFRPTSTLGCAGLMQAYRAGNVAICNA VGTGIADDKSVYPYVPEMIRFYLGEQPILANVPTWMCRRPEDLQYVLGHLPELVVKEVHGAGGYGMLIGPAATRAEIEDF RAALLANPAGYIAQPTLSLSTCPTYVDAGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVL GDEDGGQ
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 53834; Mature: 53834
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQFDEMYTVLPFGGSDVRAHYRHYGQWLAQQPADAMQARRAQAEVIFRRVGITFAVYGD CCCHHCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCEEEEEECC KDEEGAGTERLIPFDLIPRIIPAQEWRRMRRGLVQRVTALNRFIHDIYHGQDILRAGIVP CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC ADLILANAQFRPEMVGLDVPQDVYAHIAGIDLVRAPGADGEGIHYVLEDNLRVPSGVSYM HHHEEECCCCCCCEECCCCCHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCCCCCHHHH LENRKMMMRLFPELFALHKVAPVAHYPDLLLDTLRASAPAWSSADPTVVVLTPGMHNSAY HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHH FEHAFLAQQMGVELVEGQDLVVKDNVVYMRTTRGLQRVHVIYRRVDDDFLDPQVFRPTST HHHHHHHHHHCCEEECCCCEEEECCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCH LGCAGLMQAYRAGNVAICNAVGTGIADDKSVYPYVPEMIRFYLGEQPILANVPTWMCRRP HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCC EDLQYVLGHLPELVVKEVHGAGGYGMLIGPAATRAEIEDFRAALLANPAGYIAQPTLSLS HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCCC TCPTYVDAGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVL CCCHHHHCCCCCCEECCCCEEECCCEEEEECCCCEEEEEECCCEEEECCCCCCCCCEEEE GDEDGGQ CCCCCCC >Mature Secondary Structure MQQFDEMYTVLPFGGSDVRAHYRHYGQWLAQQPADAMQARRAQAEVIFRRVGITFAVYGD CCCHHCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCEEEEEECC KDEEGAGTERLIPFDLIPRIIPAQEWRRMRRGLVQRVTALNRFIHDIYHGQDILRAGIVP CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC ADLILANAQFRPEMVGLDVPQDVYAHIAGIDLVRAPGADGEGIHYVLEDNLRVPSGVSYM HHHEEECCCCCCCEECCCCCHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCCCCCHHHH LENRKMMMRLFPELFALHKVAPVAHYPDLLLDTLRASAPAWSSADPTVVVLTPGMHNSAY HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHH FEHAFLAQQMGVELVEGQDLVVKDNVVYMRTTRGLQRVHVIYRRVDDDFLDPQVFRPTST HHHHHHHHHHCCEEECCCCEEEECCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCH LGCAGLMQAYRAGNVAICNAVGTGIADDKSVYPYVPEMIRFYLGEQPILANVPTWMCRRP HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCC EDLQYVLGHLPELVVKEVHGAGGYGMLIGPAATRAEIEDFRAALLANPAGYIAQPTLSLS HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCCC TCPTYVDAGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVL CCCHHHHCCCCCCEECCCCEEECCCEEEEECCCCEEEEEECCCEEEECCCCCCCCCEEEE GDEDGGQ CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]