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The map label for this gene is yggS [C]

Identifier: 222109633

GI number: 222109633

Start: 418071

End: 418787

Strand: Direct

Name: yggS [C]

Synonym: Dtpsy_0413

Alternate gene names: 222109633

Gene position: 418071-418787 (Clockwise)

Preceding gene: 222109628

Following gene: 222109634

Centisome position: 11.01

GC content: 70.85

Gene sequence:

>717_bases
ATGACGACGATTGCCAGCAACCTCCAGAATGTGCGGGAGCGCATCGCGCGCGCCTGCGCGGCTGCCGGCAGGCCACCCGA
TGCCGTGGCGCTGCTGGCGGTTTCCAAGACCTTCGGCCCCGAGGCCGTGCGTGACGCGGCATTGGCGGGCCAGCGGCGGT
TTGGCGAAAACTACATTCAGGAAGCCGTGGAAAAGATGGCTCTGGTGGCGGCGCTCGGGCTGCCGCAGGCGCTGGAGTGG
CACTGCATCGGCCCGGTGCAAAGCAACAAGACCCGCCTGGTGGCCCAGCACTTCGACTGGGTGCACACGGTGGACCGCCC
CAAGACGGCGCAGCGTCTGTCCGACCAACGTCCCGACAACCTGCCCGCGCTGCAGGTCTGTATCCAGGTGAACGTGGATG
GTGGCGCCACCAAGGCCGGTGTGCCGGCCGAGGAGGCATTGGCTCTGGCCCAGGCGGTGGCAGCGCTGCCGCGGCTCACG
CTGCGCGGCGTCATGAGCATCCCCGACCCGGCGCCCGACGAGGCCGCGCAACTGGCCGTGCTGCTGCGCGTGCGCCAGGT
GTTCGACACCCTGCGCGCGCAGGGCGGCCCGGGGTTCGAGGCGGTCGATACCCTGTCGCTGGGCATGACCGGCGACCTGG
AGGCCGCGGTGCGCGCCGGTAGCACCATGGTGCGCGTGGGCAGCGGCATCTTCGGTGCGCGCCACTACCCGGCCTGA

Upstream 100 bases:

>100_bases
AAAGGTGCAGGTCGGACGCCTTGTTCTTCACGCTGAAGGCGAGCAATTGGGTGATGTCCACGGATTCCCTCTTATCGTTT
GATACGCTTGGGCGAACATT

Downstream 100 bases:

>100_bases
TAAGCTGGCCGTCATCTAGTTTTGACGGAGATTCCCTCATGCCCGGTTTGCTGCCCGACGTCGATCCCGATGGCCTGCTC
GAATTCTCGGTGGTCTATAC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTTIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEAVEKMALVAALGLPQALEW
HCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLT
LRGVMSIPDPAPDEAAQLAVLLRVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYPA

Sequences:

>Translated_238_residues
MTTIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEAVEKMALVAALGLPQALEW
HCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLT
LRGVMSIPDPAPDEAAQLAVLLRVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYPA
>Mature_237_residues
TTIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEAVEKMALVAALGLPQALEWH
CIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTL
RGVMSIPDPAPDEAAQLAVLLRVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYPA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=246, Percent_Identity=36.1788617886179, Blast_Score=116, Evalue=2e-26,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=51.271186440678, Blast_Score=235, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI17533025, Length=248, Percent_Identity=35.4838709677419, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45550861, Length=250, Percent_Identity=36.4, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25155; Mature: 25024

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
EAVEKMALVAALGLPQALEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDN
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
LPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPAPDEAAQLAV
CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LLRVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYPA
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEECCCCCCCCCCCC
>Mature Secondary Structure 
TTIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
EAVEKMALVAALGLPQALEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDN
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
LPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPAPDEAAQLAV
CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LLRVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYPA
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]