| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109601
Identifier: 222109601
GI number: 222109601
Start: 392534
End: 394267
Strand: Direct
Name: 222109601
Synonym: Dtpsy_0381
Alternate gene names: NA
Gene position: 392534-394267 (Clockwise)
Preceding gene: 222109600
Following gene: 222109602
Centisome position: 10.34
GC content: 65.17
Gene sequence:
>1734_bases ATGAAGATGCAGTTCAAGGCGATCGCGTTCGCCGCCGCGGCGCTGGCGCTGGGGCAGGCAGCCTGGGCCGGCGAGGCCGA GGCCAAGAAGTGGATCGACAGCGAGTTCCAGCCCTCCACGCTGAGCAAAGACCAGCAGATGGCCGAGATGAAGTGGTTCA TCGACGCGGCCAAGAAGCTGCAGGCCAAGGGCGTGAAGGAGATCGCGGTGGTCTCCGAGACCATCACCACGCACGAGTAC GAATCCAAGACCCTGGCCAAGGCGTTCAGCGAGATCACGGGCATCCAGGTCAAGCACGACCTGATCCAAGAGGGCGACGT GGTCGAGAAGCTGCAGACCTCCATGCAGTCGGGCAAGTCCATCTATGACGGCTGGATCAGCGACTCCGACCTCATCGGCA CCCACTACCGCTACGGCAAGATCCTGAACCTGTCCGACTACATGGCCGGCCCGGGCAAGGACTACACCAACCCCGGCCTG GATCTGCAGGACTTCATCGGCACCAAGTTCACCACCGCCCCGGACGGCAAGCTGTACCAGCTGCCCGACCAGCAGTTCGC CAACCTGTACTGGTTCCGCGCCGACCTGTTCGACCGCAAAGACTTGAAGGACAAGTTCAAGGCCAAGTACGGCTACGACC TGGGCGTGCCGCTGAACTGGTCTGCCTATGAAGACATCGCCGAGTTCTTCACCAATGACGTGAAGCAGATCGACGGCAAG CCCATCTACGGCCACATGGACTACGGCAAGAAGGACCCGTCGCTGGGCTGGCGCTTCACCGACGCCTGGCTGTCCATGGC CGGCAGCGCCGACATCGGCACGCCCAACGGCCTGCCCATCGACGAATGGGGCATCCGCGTGGCCGACGACAAGTGCACCC CGGTGGGCGCCAGCGTGGCCCGTGGCGGCGCGACCAACTCGCCGGCCGCCGTCTACGCGCTCACCAAGTACGTGGACTGG ATGAAGAAGTACGCGCCCAAGGAAGCCATGGGCATGACCTTCGGCGAGGCCGGCCCCGTGCCCGCCCAGGGCCAGATCGC GCAGCAGATCTTCTGGTACACCGCCTTCACCGCCGACATGACCAAACCCGGCCTGCCCGTGGTGAATGCCGACGGCACGC CCAAGTGGCGCATGGCCCCCGGCCCCAACGGCCCGTACTGGAAGCAGGGCATGCAAAACGGCTACCAGGACGTGGGCAGC TGGACCTTCTTCAAGGACCACAACCCCGACCGTCTGGCCGCCGCGTGGCTCTACGCCCAGTTCGTGACGGCCAAGAGCAC GTCGCTGAAGAAGACCGTCGTCGGCCTGACGCCGATCCGCGAGTCCGACATCCGATCCAAGGCCATGACCGACATGGCGC CCAAGCTGGGCGGCCTGGTCGAGTTCTACCGCAGCCCTGCGCGCGTGGCCTGGTCTCCCACCGGCACCAACGTGCCCGAC TACCCCAAGCTGGCGCAGCTGTGGTGGAAGAACGTGGCCCAGGCCGTCACGGGCGAGAAGACCCCGCAGGCCGCCATGGA CACACTGGCTGACGAGATGGACCAGGTGATGGCCCGCCTGCAGCGCGCCGGCATGGAGCGCTGCGCGCCCAAGCTGAACG CCAAGGGTGACCCGGCCAAGTGGCTGAGCGACCAGCACGCGCCATGGAAGAAGCTCGCCAATGAGAAGCCCAAGGGCGAA ACCATCAACTACAACACCCTGCTGCAGGCCTGGAAAGACGGCAAGGTGCGTTGA
Upstream 100 bases:
>100_bases AAGCGCCAGTAGCTCACATTTTTATAAAAGGGGCCAGCCGACTCTCCCCCGGCACCGGCGCCCATCCAACCCCGGGGAGC GTTCTTGTGAGGAGACAGCA
Downstream 100 bases:
>100_bases TGCCGCAGCGGATGGGCCCTTTGCCGGGCCCATCCCGCGGATCCGGTCACAATTCAGGGTAAACCCTGATTTTTCTGCCA GGGTTACGGACCATTCCCCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC-Type Sugar Transport System Periplasmic Component; Sugar ABC Transporter; Twin-Arginine Translocation Pathway Signal; Abc-Type Sugar Transport System Periplasmic Component
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MKMQFKAIAFAAAALALGQAAWAGEAEAKKWIDSEFQPSTLSKDQQMAEMKWFIDAAKKLQAKGVKEIAVVSETITTHEY ESKTLAKAFSEITGIQVKHDLIQEGDVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGKILNLSDYMAGPGKDYTNPGL DLQDFIGTKFTTAPDGKLYQLPDQQFANLYWFRADLFDRKDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFTNDVKQIDGK PIYGHMDYGKKDPSLGWRFTDAWLSMAGSADIGTPNGLPIDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDW MKKYAPKEAMGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGS WTFFKDHNPDRLAAAWLYAQFVTAKSTSLKKTVVGLTPIRESDIRSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNVPD YPKLAQLWWKNVAQAVTGEKTPQAAMDTLADEMDQVMARLQRAGMERCAPKLNAKGDPAKWLSDQHAPWKKLANEKPKGE TINYNTLLQAWKDGKVR
Sequences:
>Translated_577_residues MKMQFKAIAFAAAALALGQAAWAGEAEAKKWIDSEFQPSTLSKDQQMAEMKWFIDAAKKLQAKGVKEIAVVSETITTHEY ESKTLAKAFSEITGIQVKHDLIQEGDVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGKILNLSDYMAGPGKDYTNPGL DLQDFIGTKFTTAPDGKLYQLPDQQFANLYWFRADLFDRKDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFTNDVKQIDGK PIYGHMDYGKKDPSLGWRFTDAWLSMAGSADIGTPNGLPIDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDW MKKYAPKEAMGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGS WTFFKDHNPDRLAAAWLYAQFVTAKSTSLKKTVVGLTPIRESDIRSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNVPD YPKLAQLWWKNVAQAVTGEKTPQAAMDTLADEMDQVMARLQRAGMERCAPKLNAKGDPAKWLSDQHAPWKKLANEKPKGE TINYNTLLQAWKDGKVR >Mature_577_residues MKMQFKAIAFAAAALALGQAAWAGEAEAKKWIDSEFQPSTLSKDQQMAEMKWFIDAAKKLQAKGVKEIAVVSETITTHEY ESKTLAKAFSEITGIQVKHDLIQEGDVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGKILNLSDYMAGPGKDYTNPGL DLQDFIGTKFTTAPDGKLYQLPDQQFANLYWFRADLFDRKDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFTNDVKQIDGK PIYGHMDYGKKDPSLGWRFTDAWLSMAGSADIGTPNGLPIDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDW MKKYAPKEAMGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGS WTFFKDHNPDRLAAAWLYAQFVTAKSTSLKKTVVGLTPIRESDIRSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNVPD YPKLAQLWWKNVAQAVTGEKTPQAAMDTLADEMDQVMARLQRAGMERCAPKLNAKGDPAKWLSDQHAPWKKLANEKPKGE TINYNTLLQAWKDGKVR
Specific function: Unknown
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64092; Mature: 64092
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMQFKAIAFAAAALALGQAAWAGEAEAKKWIDSEFQPSTLSKDQQMAEMKWFIDAAKKL CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH QAKGVKEIAVVSETITTHEYESKTLAKAFSEITGIQVKHDLIQEGDVVEKLQTSMQSGKS HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCH IYDGWISDSDLIGTHYRYGKILNLSDYMAGPGKDYTNPGLDLQDFIGTKFTTAPDGKLYQ HHHCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEE LPDQQFANLYWFRADLFDRKDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFTNDVKQIDGK CCCHHHHHEEEEHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC PIYGHMDYGKKDPSLGWRFTDAWLSMAGSADIGTPNGLPIDEWGIRVADDKCTPVGASVA CEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHCCCEECCCCCCCCCHHHH RGGATNSPAAVYALTKYVDWMKKYAPKEAMGMTFGEAGPVPAQGQIAQQIFWYTAFTADM CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC TKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGSWTFFKDHNPDRLAAAWLYAQ CCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH FVTAKSTSLKKTVVGLTPIRESDIRSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNVPD HHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC YPKLAQLWWKNVAQAVTGEKTPQAAMDTLADEMDQVMARLQRAGMERCAPKLNAKGDPAK CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH WLSDQHAPWKKLANEKPKGETINYNTLLQAWKDGKVR HHCCCCCCHHHHCCCCCCCCEECHHHHHHHHCCCCCC >Mature Secondary Structure MKMQFKAIAFAAAALALGQAAWAGEAEAKKWIDSEFQPSTLSKDQQMAEMKWFIDAAKKL CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH QAKGVKEIAVVSETITTHEYESKTLAKAFSEITGIQVKHDLIQEGDVVEKLQTSMQSGKS HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCH IYDGWISDSDLIGTHYRYGKILNLSDYMAGPGKDYTNPGLDLQDFIGTKFTTAPDGKLYQ HHHCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEE LPDQQFANLYWFRADLFDRKDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFTNDVKQIDGK CCCHHHHHEEEEHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC PIYGHMDYGKKDPSLGWRFTDAWLSMAGSADIGTPNGLPIDEWGIRVADDKCTPVGASVA CEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHCCCEECCCCCCCCCHHHH RGGATNSPAAVYALTKYVDWMKKYAPKEAMGMTFGEAGPVPAQGQIAQQIFWYTAFTADM CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC TKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGSWTFFKDHNPDRLAAAWLYAQ CCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH FVTAKSTSLKKTVVGLTPIRESDIRSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNVPD HHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC YPKLAQLWWKNVAQAVTGEKTPQAAMDTLADEMDQVMARLQRAGMERCAPKLNAKGDPAK CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH WLSDQHAPWKKLANEKPKGETINYNTLLQAWKDGKVR HHCCCCCCHHHHCCCCCCCCEECHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA