| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109404
Identifier: 222109404
GI number: 222109404
Start: 206122
End: 207072
Strand: Direct
Name: 222109404
Synonym: Dtpsy_0183
Alternate gene names: NA
Gene position: 206122-207072 (Clockwise)
Preceding gene: 222109403
Following gene: 222109405
Centisome position: 5.43
GC content: 74.34
Gene sequence:
>951_bases ATGAACACTGCCTGGACGCCCCTGGCCGCCGCGCCCGCGCAACTCGGCGAATCTCCCTTCTGGCACCCCCTGGAGTCCCG TCTGTACTGGGTGGACATCGCCGGCCGCGCGCTGTGGCGCAGCGGCGCGCACGGAAGCGATGCGCAATGCTGGCCCCTGC CGGCCGAGCCCGGCTGCATCGCGCCGGCGCGCCAAGGGGGCACACCCGCAGGTCTCGTGGTGGCGCTGCGCGACCGCATC TGCCACGCGCCGCGCTGGGGCGGGCCGCTCCTCACGATGGCGCACTTGCCCATCGACCCGGCGACCGAGCGTGCCAACGA CGGCAAGTGCGACGCGCTCGGGCGCCTGTGGGTGGGCACGGTGCATGAGCCCGCCCAGGGCCCGCGCCAGCCCGTCGCTG CGCTGTACTGCATCGACCTGCGTGGCCGGGACCAGGGCGGCCCCGATGCTCCCACGGTGCGCCGCATGCTGGACGGCGTG GCCACCGCCAACGGCCTGGCCTGGTCGCCGGACGGGCGCACGCTGTATTGGAGCGACACGCCCTCGCACACCATCCGCGC GTGGGACTGCAACGCCCAGTTGGAGCCCATCGGGGCGCCGCGTGTGTTGCACCGCTTTGCGACGCGCGATGAGGCAGTCC CCTATGGCGGCCGCCCGGACGGTGCCGCCGTGGATGCCGAAGGCGCCTACTGGTGCGCGCTGTACGAGGGCGCGCGCGTG CTGCGCTTGTCGCCGCGCGGCGAGGTGCTGGCCGAGCTGCCCACGCCGCTGTCCTGCCCCACCATGCCCTGCGTCGGTGG GCCGGACGGGCACACGCTGTTCGTCACCTCTGCACGCAAGGGCCGCAGTGCCGATGAGCTGGCGCGCTGGCCCCAGTCGG GGCAGGTGCTGTCCACCCGCGTGGCCGTGGCGGGGTTGCCCGTGGCCTGGTGCGAGATCGGCCAGCGCTGA
Upstream 100 bases:
>100_bases CCCCGATGACAAGCGAGCAACTCCCTGTCCCTTTTTTGGGCCCGCCCTTGGCGGGCCTTTTCTTTGGGCGGCGCGCAGGC CCGGGGCCAATAATGCCTGC
Downstream 100 bases:
>100_bases CCCCTGCGGCGCGCATGGCTGCCAGCGCCATTCACGCCGCGCGTTCAAAAAAATCAAACCTGCGCCACGGCCGCCCGAAA GGGCAGGGCAGTACCATCGC
Product: smp-30/gluconolaconase/lre domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 316
Protein sequence:
>316_residues MNTAWTPLAAAPAQLGESPFWHPLESRLYWVDIAGRALWRSGAHGSDAQCWPLPAEPGCIAPARQGGTPAGLVVALRDRI CHAPRWGGPLLTMAHLPIDPATERANDGKCDALGRLWVGTVHEPAQGPRQPVAALYCIDLRGRDQGGPDAPTVRRMLDGV ATANGLAWSPDGRTLYWSDTPSHTIRAWDCNAQLEPIGAPRVLHRFATRDEAVPYGGRPDGAAVDAEGAYWCALYEGARV LRLSPRGEVLAELPTPLSCPTMPCVGGPDGHTLFVTSARKGRSADELARWPQSGQVLSTRVAVAGLPVAWCEIGQR
Sequences:
>Translated_316_residues MNTAWTPLAAAPAQLGESPFWHPLESRLYWVDIAGRALWRSGAHGSDAQCWPLPAEPGCIAPARQGGTPAGLVVALRDRI CHAPRWGGPLLTMAHLPIDPATERANDGKCDALGRLWVGTVHEPAQGPRQPVAALYCIDLRGRDQGGPDAPTVRRMLDGV ATANGLAWSPDGRTLYWSDTPSHTIRAWDCNAQLEPIGAPRVLHRFATRDEAVPYGGRPDGAAVDAEGAYWCALYEGARV LRLSPRGEVLAELPTPLSCPTMPCVGGPDGHTLFVTSARKGRSADELARWPQSGQVLSTRVAVAGLPVAWCEIGQR >Mature_316_residues MNTAWTPLAAAPAQLGESPFWHPLESRLYWVDIAGRALWRSGAHGSDAQCWPLPAEPGCIAPARQGGTPAGLVVALRDRI CHAPRWGGPLLTMAHLPIDPATERANDGKCDALGRLWVGTVHEPAQGPRQPVAALYCIDLRGRDQGGPDAPTVRRMLDGV ATANGLAWSPDGRTLYWSDTPSHTIRAWDCNAQLEPIGAPRVLHRFATRDEAVPYGGRPDGAAVDAEGAYWCALYEGARV LRLSPRGEVLAELPTPLSCPTMPCVGGPDGHTLFVTSARKGRSADELARWPQSGQVLSTRVAVAGLPVAWCEIGQR
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=296, Percent_Identity=31.0810810810811, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI4759036, Length=296, Percent_Identity=31.0810810810811, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI45551448, Length=289, Percent_Identity=26.2975778546713, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24641471, Length=289, Percent_Identity=26.2975778546713, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI18860103, Length=289, Percent_Identity=26.2975778546713, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24641469, Length=289, Percent_Identity=26.2975778546713, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24646912, Length=278, Percent_Identity=27.3381294964029, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24646910, Length=278, Percent_Identity=27.3381294964029, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 33840; Mature: 33840
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTAWTPLAAAPAQLGESPFWHPLESRLYWVDIAGRALWRSGAHGSDAQCWPLPAEPGCI CCCCCCCHHHCHHHHCCCCCCCCHHCCEEEEEECCHHHHCCCCCCCCCEEEECCCCCCCC APARQGGTPAGLVVALRDRICHAPRWGGPLLTMAHLPIDPATERANDGKCDALGRLWVGT CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHEEECC VHEPAQGPRQPVAALYCIDLRGRDQGGPDAPTVRRMLDGVATANGLAWSPDGRTLYWSDT CCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCEEEECCC PSHTIRAWDCNAQLEPIGAPRVLHRFATRDEAVPYGGRPDGAAVDAEGAYWCALYEGARV CCCEEEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEECCCEE LRLSPRGEVLAELPTPLSCPTMPCVGGPDGHTLFVTSARKGRSADELARWPQSGQVLSTR EEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEE VAVAGLPVAWCEIGQR HHHHCCCHHHHHCCCC >Mature Secondary Structure MNTAWTPLAAAPAQLGESPFWHPLESRLYWVDIAGRALWRSGAHGSDAQCWPLPAEPGCI CCCCCCCHHHCHHHHCCCCCCCCHHCCEEEEEECCHHHHCCCCCCCCCEEEECCCCCCCC APARQGGTPAGLVVALRDRICHAPRWGGPLLTMAHLPIDPATERANDGKCDALGRLWVGT CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHEEECC VHEPAQGPRQPVAALYCIDLRGRDQGGPDAPTVRRMLDGVATANGLAWSPDGRTLYWSDT CCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCEEEECCC PSHTIRAWDCNAQLEPIGAPRVLHRFATRDEAVPYGGRPDGAAVDAEGAYWCALYEGARV CCCEEEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEECCCEE LRLSPRGEVLAELPTPLSCPTMPCVGGPDGHTLFVTSARKGRSADELARWPQSGQVLSTR EEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEE VAVAGLPVAWCEIGQR HHHHCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA