| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is ydfG [C]
Identifier: 222102912
GI number: 222102912
Start: 597318
End: 598070
Strand: Direct
Name: ydfG [C]
Synonym: Avi_7662
Alternate gene names: 222102912
Gene position: 597318-598070 (Clockwise)
Preceding gene: 222102910
Following gene: 222102913
Centisome position: 94.55
GC content: 55.11
Gene sequence:
>753_bases ATGCCATTTTCGGATTACAAAACTGCGCTTGTCACTGGCGCATCCTCCGGGATCGGAGCCGCTATTGTGGAGCGGCTGTG CGCTGAGAATGTTGAAGTGCATGCGGTTGCCAGAAGTGGTGATCTCCTCAAACAGCTTTCCGAGAAAACCGGCTGCATTG CCCATGTGATTGACGTCACGGATCGCGCCGCTCTGGCGGACCTCACATCCAAAATTCCATTTGATATTCTCGTCAATAAT GCCGGTGTTGACCGTCCAAAGAAGTTTCTGGAAGCAGAAGACGGCGATATTGACCTGCTGGTGGATGTGAACCTGCGGGC TGTCTTGCATCTGTGCCGCATGGTTGTGCCGGGCATGGTGGCGCGCGATCGTGGCCACGTTATCAACATCTCATCCATCG CCGCTCAGTATAATTTCGGTGGAAATTCCTCCTATCACGCTACCAAGGCTGGCGTCAGCATGCTGTCCAACCAGTTGCGC ATTGATGCCTTTGGCAAGCGCGTGCGGGTCACGGAAATCTGCCCCGGCCGCGTTGCAACCGATATTTTCACCCATGTCCA CGGTGATGACCCTTCAGTGCGTGAGCGCTTTATTGATGGCTTTGAATTGCCACAGGCGTCCGACATTGCCGATGCCATTG CCTTTGCCATTGCCGCACCCATTGCCGTTAACATCGGCCATATGGAAATCACCCCCACCCTACAAGTGATGGGCGGATTG CAGACGGCCAAGCCGGAGGAGCGGAAGCCTTGA
Upstream 100 bases:
>100_bases ACCAAGCTCATAAGATAGGCTTATCACTCCACATATAATCGGCATTATCGCTCAGACTAAAGCTTCGCTAGTCTTTCCCA AGAACAAAAGAGGACGTCAG
Downstream 100 bases:
>100_bases AGGGGTTCGATCTCTCAGCAATTCTTGGCAATCCAGACTATGTCTCCATGCTGCTGCACGGCATAGAGATGACCTTCATT ATCGCCATTGGCTCATGGGT
Product: short-chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MPFSDYKTALVTGASSGIGAAIVERLCAENVEVHAVARSGDLLKQLSEKTGCIAHVIDVTDRAALADLTSKIPFDILVNN AGVDRPKKFLEAEDGDIDLLVDVNLRAVLHLCRMVVPGMVARDRGHVINISSIAAQYNFGGNSSYHATKAGVSMLSNQLR IDAFGKRVRVTEICPGRVATDIFTHVHGDDPSVRERFIDGFELPQASDIADAIAFAIAAPIAVNIGHMEITPTLQVMGGL QTAKPEERKP
Sequences:
>Translated_250_residues MPFSDYKTALVTGASSGIGAAIVERLCAENVEVHAVARSGDLLKQLSEKTGCIAHVIDVTDRAALADLTSKIPFDILVNN AGVDRPKKFLEAEDGDIDLLVDVNLRAVLHLCRMVVPGMVARDRGHVINISSIAAQYNFGGNSSYHATKAGVSMLSNQLR IDAFGKRVRVTEICPGRVATDIFTHVHGDDPSVRERFIDGFELPQASDIADAIAFAIAAPIAVNIGHMEITPTLQVMGGL QTAKPEERKP >Mature_249_residues PFSDYKTALVTGASSGIGAAIVERLCAENVEVHAVARSGDLLKQLSEKTGCIAHVIDVTDRAALADLTSKIPFDILVNNA GVDRPKKFLEAEDGDIDLLVDVNLRAVLHLCRMVVPGMVARDRGHVINISSIAAQYNFGGNSSYHATKAGVSMLSNQLRI DAFGKRVRVTEICPGRVATDIFTHVHGDDPSVRERFIDGFELPQASDIADAIAFAIAAPIAVNIGHMEITPTLQVMGGLQ TAKPEERKP
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=28.6290322580645, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=30.6122448979592, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI7705855, Length=190, Percent_Identity=32.1052631578947, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI40807363, Length=203, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI66933014, Length=156, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI32483357, Length=224, Percent_Identity=29.4642857142857, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=32.0441988950276, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=28.2868525896414, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI226371731, Length=191, Percent_Identity=27.2251308900524, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=34.8360655737705, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=34.7826086956522, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI87082160, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI2367365, Length=179, Percent_Identity=34.0782122905028, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787905, Length=224, Percent_Identity=30.3571428571429, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560676, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=27.5590551181102, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=26.4591439688716, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=28.5140562248996, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203117, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562910, Length=212, Percent_Identity=31.1320754716981, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203115, Length=203, Percent_Identity=29.064039408867, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=28, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562904, Length=217, Percent_Identity=30.4147465437788, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17559104, Length=237, Percent_Identity=28.6919831223629, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=26.8421052631579, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=26.6129032258064, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17561402, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562906, Length=237, Percent_Identity=29.535864978903, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193204405, Length=237, Percent_Identity=27.4261603375527, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17564282, Length=208, Percent_Identity=25.9615384615385, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=249, Percent_Identity=30.5220883534137, Blast_Score=86, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6322227, Length=218, Percent_Identity=27.9816513761468, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=28.494623655914, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=30.3664921465969, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=35.7541899441341, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=30.2040816326531, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=240, Percent_Identity=29.5833333333333, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=30.3643724696356, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=30.3643724696356, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=28.968253968254, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=28.7449392712551, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=29.3193717277487, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644339, Length=228, Percent_Identity=28.0701754385965, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=31.3008130081301, Blast_Score=77, Evalue=7e-15, Organism=Drosophila melanogaster, GI28571526, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007234, Length=247, Percent_Identity=31.9838056680162, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24648944, Length=237, Percent_Identity=29.1139240506329, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581726, Length=206, Percent_Identity=27.6699029126214, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357041, Length=233, Percent_Identity=27.0386266094421, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24584752, Length=225, Percent_Identity=28, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI28571387, Length=234, Percent_Identity=26.0683760683761, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24641388, Length=255, Percent_Identity=28.6274509803922, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649181, Length=200, Percent_Identity=28.5, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=31.5217391304348, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=24.6073298429319, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26795; Mature: 26664
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFSDYKTALVTGASSGIGAAIVERLCAENVEVHAVARSGDLLKQLSEKTGCIAHVIDVT CCCCHHHHHEEECCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEHHHH DRAALADLTSKIPFDILVNNAGVDRPKKFLEAEDGDIDLLVDVNLRAVLHLCRMVVPGMV HHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCHH ARDRGHVINISSIAAQYNFGGNSSYHATKAGVSMLSNQLRIDAFGKRVRVTEICPGRVAT CCCCCCEEEHHHHHEEECCCCCCCCHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHH DIFTHVHGDDPSVRERFIDGFELPQASDIADAIAFAIAAPIAVNIGHMEITPTLQVMGGL HHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEECHHHHHHCCC QTAKPEERKP CCCCCCCCCC >Mature Secondary Structure PFSDYKTALVTGASSGIGAAIVERLCAENVEVHAVARSGDLLKQLSEKTGCIAHVIDVT CCCHHHHHEEECCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEHHHH DRAALADLTSKIPFDILVNNAGVDRPKKFLEAEDGDIDLLVDVNLRAVLHLCRMVVPGMV HHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCHH ARDRGHVINISSIAAQYNFGGNSSYHATKAGVSMLSNQLRIDAFGKRVRVTEICPGRVAT CCCCCCEEEHHHHHEEECCCCCCCCHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHH DIFTHVHGDDPSVRERFIDGFELPQASDIADAIAFAIAAPIAVNIGHMEITPTLQVMGGL HHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEECHHHHHHCCC QTAKPEERKP CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]