Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 222102909

GI number: 222102909

Start: 594078

End: 594845

Strand: Direct

Name: ybgL [C]

Synonym: Avi_7659

Alternate gene names: 222102909

Gene position: 594078-594845 (Clockwise)

Preceding gene: 222102908

Following gene: 222102910

Centisome position: 94.03

GC content: 59.38

Gene sequence:

>768_bases
ATGAAGATTGATCTCAATTCCGATATGGGCGAAGGCTTTGGTCCCTACCGCCTGTGTGACGATGAAGCACTGATGGATGT
TGTGTCCTCGGCCAATATTGCCTGCGGTTTTCATGCGGGCGACCCGGAAATGATGCTGCGCATGGTGCGGCTGGCCAAGG
CCCGAGGCGTCGGCATTGGCGCGCACCCCGGCTTTCCTGATCGGCTGGGTTTTGGCCGCCGCGATATTCCCGTGTCAGCA
GAAGAACTGCGGGCGCAAGTGCTTTATCAATTGGGGGCCTTGAGCGCGATTGCCGCCAGCGAAGGCCTTTCCGTTGATCA
CATCAGCTTCCACGCCGCCATGGGAAATCGCGTCAATCACGACCCGGCACTGTGCGATCTGGTCCTGGCAGCGGTGAAAA
CCGTGGCTCCTGAGATTATTGTGTTTTGCATGTCTGGCTCGGAAATCGAGCGCTCGGCGCTCCGCTGTGGATTAAAGACG
CTGACGCTGTTTCTGGCCGACCGCGCTTATGATGCCAACGGCGCACTCGTGCCGCGCGGCGTGGCCAATTCGGTCATCAA
GGAAGAAATGGCGGTGCGCGCCCGCGTCAAACAATTCCTTGAAACGGCAACCGTCACCACCATCGACGGCCAGACCATTG
CCATGCCCGCCCGCTCCATTCTCGTGCATAGCGATACGCCCGGATCGCTGGAACTGGCGAAAATTGTGCGCAGCGAAATT
GAAGCCACGGGTGCTACCCTTGCCACTGCCCGCGACGTGATTGCCTGA

Upstream 100 bases:

>100_bases
ACAAGCCGTGGCGGGCTATTTGGCCGACATTCGCAACACCGTGCCGCTGTTGACCGACGCCCTCGCCACCATGACCAAGC
GCTAAATCTGAGGATAGATG

Downstream 100 bases:

>100_bases
CATCACCCGATTTTGAAACCTTCACCACAACACTTGAAAGTCTAGACCATGTCCATGCCCAAGCCAATGATTGCCGACCG
TCTCAAGAATGTCGCGGTTT

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKIDLNSDMGEGFGPYRLCDDEALMDVVSSANIACGFHAGDPEMMLRMVRLAKARGVGIGAHPGFPDRLGFGRRDIPVSA
EELRAQVLYQLGALSAIAASEGLSVDHISFHAAMGNRVNHDPALCDLVLAAVKTVAPEIIVFCMSGSEIERSALRCGLKT
LTLFLADRAYDANGALVPRGVANSVIKEEMAVRARVKQFLETATVTTIDGQTIAMPARSILVHSDTPGSLELAKIVRSEI
EATGATLATARDVIA

Sequences:

>Translated_255_residues
MKIDLNSDMGEGFGPYRLCDDEALMDVVSSANIACGFHAGDPEMMLRMVRLAKARGVGIGAHPGFPDRLGFGRRDIPVSA
EELRAQVLYQLGALSAIAASEGLSVDHISFHAAMGNRVNHDPALCDLVLAAVKTVAPEIIVFCMSGSEIERSALRCGLKT
LTLFLADRAYDANGALVPRGVANSVIKEEMAVRARVKQFLETATVTTIDGQTIAMPARSILVHSDTPGSLELAKIVRSEI
EATGATLATARDVIA
>Mature_255_residues
MKIDLNSDMGEGFGPYRLCDDEALMDVVSSANIACGFHAGDPEMMLRMVRLAKARGVGIGAHPGFPDRLGFGRRDIPVSA
EELRAQVLYQLGALSAIAASEGLSVDHISFHAAMGNRVNHDPALCDLVLAAVKTVAPEIIVFCMSGSEIERSALRCGLKT
LTLFLADRAYDANGALVPRGVANSVIKEEMAVRARVKQFLETATVTTIDGQTIAMPARSILVHSDTPGSLELAKIVRSEI
EATGATLATARDVIA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family [H]

Homologues:

Organism=Escherichia coli, GI1786931, Length=248, Percent_Identity=39.1129032258064, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR005501 [H]

Pfam domain/function: PF03746 LamB_YcsF [H]

EC number: NA

Molecular weight: Translated: 27076; Mature: 27076

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDLNSDMGEGFGPYRLCDDEALMDVVSSANIACGFHAGDPEMMLRMVRLAKARGVGIG
CEECCCCCCCCCCCCCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
AHPGFPDRLGFGRRDIPVSAEELRAQVLYQLGALSAIAASEGLSVDHISFHAAMGNRVNH
CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCC
DPALCDLVLAAVKTVAPEIIVFCMSGSEIERSALRCGLKTLTLFLADRAYDANGALVPRG
CHHHHHHHHHHHHHHCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
VANSVIKEEMAVRARVKQFLETATVTTIDGQTIAMPARSILVHSDTPGSLELAKIVRSEI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHH
EATGATLATARDVIA
HHCCCHHHHHHHHCC
>Mature Secondary Structure
MKIDLNSDMGEGFGPYRLCDDEALMDVVSSANIACGFHAGDPEMMLRMVRLAKARGVGIG
CEECCCCCCCCCCCCCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
AHPGFPDRLGFGRRDIPVSAEELRAQVLYQLGALSAIAASEGLSVDHISFHAAMGNRVNH
CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCC
DPALCDLVLAAVKTVAPEIIVFCMSGSEIERSALRCGLKTLTLFLADRAYDANGALVPRG
CHHHHHHHHHHHHHHCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
VANSVIKEEMAVRARVKQFLETATVTTIDGQTIAMPARSILVHSDTPGSLELAKIVRSEI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHH
EATGATLATARDVIA
HHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]