| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is menG [H]
Identifier: 222102902
GI number: 222102902
Start: 588203
End: 588877
Strand: Reverse
Name: menG [H]
Synonym: Avi_7652
Alternate gene names: 222102902
Gene position: 588877-588203 (Counterclockwise)
Preceding gene: 222102911
Following gene: 222102896
Centisome position: 93.21
GC content: 55.7
Gene sequence:
>675_bases ATGATCCACATTAAGAAAATTCCCGAGCGTCCAAGCCAGCAAGAGATTGATGCGATTGCGAAATTCTCGCCTGCGACCCT GCATGAAGCGCAGGGTCGTCGCGGTGCGCTTTCCTCCCGCATCAAGCCAGTGGATTACCGCATGAAGCTTTGCGGGCCTG CTTTCACGGTCAAGTCTGCGCCACGCGACAACATCATGCTGCAACTGGCGATCAATTATGCGCAACCGGGCGACATCATC GTGGTGTCCGGCGGCGAATACGAGGAGGCGGGGTCATTCGGTGATGTTCTGGCCAATGCCTGCCTCGCCAAAGGCATTGG TGGCCTTGTGACTGATACAGGTGTGCGCGATACCTTGCAGCTTCGAGATCTTGGCTTTCCGGTATTTTCACTCAGTGTTT GCATCAAGGGAACCGTGAAGGAAACCTTGACCGCAGTGAACGACCCGATTGTCATTGGCGATGAGCTTGTTTTTCCGGGC GACATTATCGTCGGTGATGCCGACGGTCTGGTGGTGGTCCGCCGACAGGAGGCGGTGGATGTTGCCGCACTTGCCCAAGC CCGGGAAGATGCTGAAGCTGGCTATATTGCCGCTTATAAGGCGGGGAAGTCGGTCATTGAAGTCAGTAATCTTGAGCCCG TGCTGAGGGCTAAAGGATTTTCGGTCGAAGCGTGA
Upstream 100 bases:
>100_bases TTGGCATAGCGCAAGCCTCTTAAAACGGAGGAGACCGCGCAAGGGCTGGGGTTAACCTGCGCCGTTTCGCCCTATCGAAC GAAGCTGTTTTGAGGTTGCC
Downstream 100 bases:
>100_bases GCGGGTGCTCCGGACATGGATTTGAAATTCCCCTTAAAATCTAAGAGTCTGTCCGAGAAATCATCATTGGCGTGCGATCC GTCTGACGATGGTCATGGCG
Product: demethylmenaquinone methyltransferase
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase [H]
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MIHIKKIPERPSQQEIDAIAKFSPATLHEAQGRRGALSSRIKPVDYRMKLCGPAFTVKSAPRDNIMLQLAINYAQPGDII VVSGGEYEEAGSFGDVLANACLAKGIGGLVTDTGVRDTLQLRDLGFPVFSLSVCIKGTVKETLTAVNDPIVIGDELVFPG DIIVGDADGLVVVRRQEAVDVAALAQAREDAEAGYIAAYKAGKSVIEVSNLEPVLRAKGFSVEA
Sequences:
>Translated_224_residues MIHIKKIPERPSQQEIDAIAKFSPATLHEAQGRRGALSSRIKPVDYRMKLCGPAFTVKSAPRDNIMLQLAINYAQPGDII VVSGGEYEEAGSFGDVLANACLAKGIGGLVTDTGVRDTLQLRDLGFPVFSLSVCIKGTVKETLTAVNDPIVIGDELVFPG DIIVGDADGLVVVRRQEAVDVAALAQAREDAEAGYIAAYKAGKSVIEVSNLEPVLRAKGFSVEA >Mature_224_residues MIHIKKIPERPSQQEIDAIAKFSPATLHEAQGRRGALSSRIKPVDYRMKLCGPAFTVKSAPRDNIMLQLAINYAQPGDII VVSGGEYEEAGSFGDVLANACLAKGIGGLVTDTGVRDTLQLRDLGFPVFSLSVCIKGTVKETLTAVNDPIVIGDELVFPG DIIVGDADGLVVVRRQEAVDVAALAQAREDAEAGYIAAYKAGKSVIEVSNLEPVLRAKGFSVEA
Specific function: Plays a role in protocatechuate degradation. Has a broad substrate specificity and catalyzes the aldol cleavage of 4- hydroxy-4-methyl-2-oxoglutarate, 4-hydroxy-2-oxoglutarate and 4- carboxy-4-hydroxy-2-oxoadipate, and the decarboxylation of oxaloacetate.
COG id: COG0684
COG function: function code H; Demethylmenaquinone methyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014165 - InterPro: IPR005493 [H]
Pfam domain/function: PF03737 Methyltransf_6 [H]
EC number: =4.1.1.3; =4.1.3.16; =4.1.3.17 [H]
Molecular weight: Translated: 23777; Mature: 23777
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHIKKIPERPSQQEIDAIAKFSPATLHEAQGRRGALSSRIKPVDYRMKLCGPAFTVKSA CEECCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCHHHEEECCCCEEEECCC PRDNIMLQLAINYAQPGDIIVVSGGEYEEAGSFGDVLANACLAKGIGGLVTDTGVRDTLQ CCCCEEEEEEEECCCCCCEEEECCCCCHHCCCHHHHHHHHHHHHCCCCEEECCCCCHHHH LRDLGFPVFSLSVCIKGTVKETLTAVNDPIVIGDELVFPGDIIVGDADGLVVVRRQEAVD HHHCCCCCEEEEEHCCCHHHHHHHHCCCCEEECCCEECCCCEEEECCCCEEEEECCHHHH VAALAQAREDAEAGYIAAYKAGKSVIEVSNLEPVLRAKGFSVEA HHHHHHHHHCCCCCEEEEECCCCCEEEECCCCHHHHCCCCCCCC >Mature Secondary Structure MIHIKKIPERPSQQEIDAIAKFSPATLHEAQGRRGALSSRIKPVDYRMKLCGPAFTVKSA CEECCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCHHHEEECCCCEEEECCC PRDNIMLQLAINYAQPGDIIVVSGGEYEEAGSFGDVLANACLAKGIGGLVTDTGVRDTLQ CCCCEEEEEEEECCCCCCEEEECCCCCHHCCCHHHHHHHHHHHHCCCCEEECCCCCHHHH LRDLGFPVFSLSVCIKGTVKETLTAVNDPIVIGDELVFPGDIIVGDADGLVVVRRQEAVD HHHCCCCCEEEEEHCCCHHHHHHHHCCCCEEECCCEECCCCEEEECCCCEEEEECCHHHH VAALAQAREDAEAGYIAAYKAGKSVIEVSNLEPVLRAKGFSVEA HHHHHHHHHCCCCCEEEEECCCCCEEEECCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11826967 [H]