| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102835
Identifier: 222102835
GI number: 222102835
Start: 510082
End: 510786
Strand: Reverse
Name: 222102835
Synonym: Avi_7563
Alternate gene names: NA
Gene position: 510786-510082 (Counterclockwise)
Preceding gene: 222102836
Following gene: 222102829
Centisome position: 80.85
GC content: 60.99
Gene sequence:
>705_bases ATGAGCTATGACCGCAAAGACATAGCGCATCTCGCCGACGAATATGTGCTGGGATTGCTCGAGCCAACGCAGGCGGAAGA AATCGAGAATGCCATGGAACGTGATCCTGAACTCAAGGCTGCCATTGCTGCCAGTCGAGATCGTTTCCTGCCGCTCGATA CGAGTATGGCTCCGCGACCCGTCAGCGAGGATCTCTGGAAGCGTATCGAGGCTTCCCTGCCAGTTCAGGACAACCGTCCC GCCAAACCAAACACACATATCGCAAACGATAATGGCTCTCGCCGCTGGAAGTTGGCTGCACTCACGTCGCTTGCCGCCTC ACTCCTGCTCGTCGTCGGCCTCGTCTACAGCCTGACCAGAGCGGTGGAGCCACTCGTCGTCGCCGTCCTCGTCAACGAGG CGGGAGAGGTTCAGGCGGTTGTCGAGGATTTCGGCAATGACCAGACCTCCGTGCGGCTTCTGGCGGATTTCGTCGTTCCG CGTGACAAGACGATCCAGGTCTGGACCCTGCCCTCTCGCGATGTCGGGCCGGTCCCTCTCGGCCTGCTGGAAGGCGTGCG TTCCGCCCGTCTCCATGGGCCGACGCTGCCGAAGCCGCGCAACGATCAGCTTTATGAGTTGACGCTTGAGCAGGCAGGCG GTTCGCCGACCGGTCGTCCCACCGGACCGATACTTGCCAAAGGATTTGCCCGCATGCCGCGATGA
Upstream 100 bases:
>100_bases GTTATTCCCATGGCGAAATTGCAGGCAGGCTGCGCATTCCGCTCGGCACCACCAAGTCGTGGATCAGGCGCGGGCTTCTG GCGCTGCGGGAGTGCATGGC
Downstream 100 bases:
>100_bases CGCTCCAGTGGCATAGGCAACTGAGCAAATGACCGGTTCACCGAAATGCTGCCGGGTCATCTCTTCCGAGTGTTCGGCAT AAGCCAGGTGTTTGACCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MSYDRKDIAHLADEYVLGLLEPTQAEEIENAMERDPELKAAIAASRDRFLPLDTSMAPRPVSEDLWKRIEASLPVQDNRP AKPNTHIANDNGSRRWKLAALTSLAASLLLVVGLVYSLTRAVEPLVVAVLVNEAGEVQAVVEDFGNDQTSVRLLADFVVP RDKTIQVWTLPSRDVGPVPLGLLEGVRSARLHGPTLPKPRNDQLYELTLEQAGGSPTGRPTGPILAKGFARMPR
Sequences:
>Translated_234_residues MSYDRKDIAHLADEYVLGLLEPTQAEEIENAMERDPELKAAIAASRDRFLPLDTSMAPRPVSEDLWKRIEASLPVQDNRP AKPNTHIANDNGSRRWKLAALTSLAASLLLVVGLVYSLTRAVEPLVVAVLVNEAGEVQAVVEDFGNDQTSVRLLADFVVP RDKTIQVWTLPSRDVGPVPLGLLEGVRSARLHGPTLPKPRNDQLYELTLEQAGGSPTGRPTGPILAKGFARMPR >Mature_233_residues SYDRKDIAHLADEYVLGLLEPTQAEEIENAMERDPELKAAIAASRDRFLPLDTSMAPRPVSEDLWKRIEASLPVQDNRPA KPNTHIANDNGSRRWKLAALTSLAASLLLVVGLVYSLTRAVEPLVVAVLVNEAGEVQAVVEDFGNDQTSVRLLADFVVPR DKTIQVWTLPSRDVGPVPLGLLEGVRSARLHGPTLPKPRNDQLYELTLEQAGGSPTGRPTGPILAKGFARMPR
Specific function: Unknown
COG id: COG5343
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25595; Mature: 25463
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYDRKDIAHLADEYVLGLLEPTQAEEIENAMERDPELKAAIAASRDRFLPLDTSMAPRP CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC VSEDLWKRIEASLPVQDNRPAKPNTHIANDNGSRRWKLAALTSLAASLLLVVGLVYSLTR CHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH AVEPLVVAVLVNEAGEVQAVVEDFGNDQTSVRLLADFVVPRDKTIQVWTLPSRDVGPVPL HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH GLLEGVRSARLHGPTLPKPRNDQLYELTLEQAGGSPTGRPTGPILAKGFARMPR HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure SYDRKDIAHLADEYVLGLLEPTQAEEIENAMERDPELKAAIAASRDRFLPLDTSMAPRP CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC VSEDLWKRIEASLPVQDNRPAKPNTHIANDNGSRRWKLAALTSLAASLLLVVGLVYSLTR CHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH AVEPLVVAVLVNEAGEVQAVVEDFGNDQTSVRLLADFVVPRDKTIQVWTLPSRDVGPVPL HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH GLLEGVRSARLHGPTLPKPRNDQLYELTLEQAGGSPTGRPTGPILAKGFARMPR HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA