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The map label for this gene is sigK [H]

Identifier: 222102836

GI number: 222102836

Start: 510783

End: 511328

Strand: Reverse

Name: sigK [H]

Synonym: Avi_7564

Alternate gene names: 222102836

Gene position: 511328-510783 (Counterclockwise)

Preceding gene: 222102839

Following gene: 222102835

Centisome position: 80.94

GC content: 58.97

Gene sequence:

>546_bases
ATGGGCTCCAGGCCGGTTAATCTCGATGAGGCGCTTGATGGCTGCGCAAAGGGCGACCGCCTGGCATTGCGACACATCTT
TGATCAGGAGGCGGGTAAGCTCATCGCGGTTGCCCAGCGCATCGTCAGACGTCGCGAGCTTGCTGAAGAGGTCGTGCAGG
ACTCCTTCATCCGTATATGGACGCATGCCTACCAGTACCGTTCTGATAGCGGGTCGGCGCGCGGCTGGATCTATGCCATC
GTTCGAAACCGGGCGCTCAACCTGTTGCGTGATGGCAAGCGGGAACACTCCGTCGAGGAGGTTGAAACACTTCAGGGCGA
TCAGCAGACGGATGAAATCATGGCAGCATGGCACCGCCTGGATCGCAATTCCCGTCTCTATGACTGTCTCGGTGCGCTAG
AAGATACAAAGCGGCAGGGAATTCTCATGGCCTATGTTGGCGGTTATTCCCATGGCGAAATTGCAGGCAGGCTGCGCATT
CCGCTCGGCACCACCAAGTCGTGGATCAGGCGCGGGCTTCTGGCGCTGCGGGAGTGCATGGCATGA

Upstream 100 bases:

>100_bases
AATATTTTTGATGACTGCATCTATTCCGCGCTCGCGGCGGGTATAGTTTGCAAAAGGCAGGCGGTTTGCGCACTGATCTA
AGGAGATGGTTTTGACAGTG

Downstream 100 bases:

>100_bases
GCTATGACCGCAAAGACATAGCGCATCTCGCCGACGAATATGTGCTGGGATTGCTCGAGCCAACGCAGGCGGAAGAAATC
GAGAATGCCATGGAACGTGA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MGSRPVNLDEALDGCAKGDRLALRHIFDQEAGKLIAVAQRIVRRRELAEEVVQDSFIRIWTHAYQYRSDSGSARGWIYAI
VRNRALNLLRDGKREHSVEEVETLQGDQQTDEIMAAWHRLDRNSRLYDCLGALEDTKRQGILMAYVGGYSHGEIAGRLRI
PLGTTKSWIRRGLLALRECMA

Sequences:

>Translated_181_residues
MGSRPVNLDEALDGCAKGDRLALRHIFDQEAGKLIAVAQRIVRRRELAEEVVQDSFIRIWTHAYQYRSDSGSARGWIYAI
VRNRALNLLRDGKREHSVEEVETLQGDQQTDEIMAAWHRLDRNSRLYDCLGALEDTKRQGILMAYVGGYSHGEIAGRLRI
PLGTTKSWIRRGLLALRECMA
>Mature_180_residues
GSRPVNLDEALDGCAKGDRLALRHIFDQEAGKLIAVAQRIVRRRELAEEVVQDSFIRIWTHAYQYRSDSGSARGWIYAIV
RNRALNLLRDGKREHSVEEVETLQGDQQTDEIMAAWHRLDRNSRLYDCLGALEDTKRQGILMAYVGGYSHGEIAGRLRIP
LGTTKSWIRRGLLALRECMA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20621; Mature: 20490

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSRPVNLDEALDGCAKGDRLALRHIFDQEAGKLIAVAQRIVRRRELAEEVVQDSFIRIW
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THAYQYRSDSGSARGWIYAIVRNRALNLLRDGKREHSVEEVETLQGDQQTDEIMAAWHRL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
DRNSRLYDCLGALEDTKRQGILMAYVGGYSHGEIAGRLRIPLGTTKSWIRRGLLALRECM
CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC
A
C
>Mature Secondary Structure 
GSRPVNLDEALDGCAKGDRLALRHIFDQEAGKLIAVAQRIVRRRELAEEVVQDSFIRIW
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THAYQYRSDSGSARGWIYAIVRNRALNLLRDGKREHSVEEVETLQGDQQTDEIMAAWHRL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
DRNSRLYDCLGALEDTKRQGILMAYVGGYSHGEIAGRLRIPLGTTKSWIRRGLLALRECM
CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA