| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102815
Identifier: 222102815
GI number: 222102815
Start: 480974
End: 481495
Strand: Direct
Name: 222102815
Synonym: Avi_7537
Alternate gene names: NA
Gene position: 480974-481495 (Clockwise)
Preceding gene: 222102814
Following gene: 222102816
Centisome position: 76.13
GC content: 53.64
Gene sequence:
>522_bases ATGGAAACTGCTGATGACTTTGCAAACAATGCCTGGACGGCCATGTGCAATCTCTATCGCGCGCCGAACGTCGCGCAGTT TTGTATTCGCTTGCAGGATGGTTACGGCATTGATGTGCCGCTGTTGTTGCTGCTGTTTTATGCCGATCAGCAAGGAATCG GCACGGATATCCAAGATTTGAATGCATTCCTGACGGATGCGACTTCATGGCGTGAGGATGTTGTGAAGCCGCTGCGGACC ATACGTCAGGGCATGAAGGGCCGCTACACGGAGCATGATGAGGTTCAGCTCCGTGAGACGGTCAAGGCACTGGAATTGCG GGCGGAACAAGTACACGTCTCACGCCTCGCCCGCAGTTTTATGTCCCATGCAAAACCAACAGATGAGAGCCAGGCAACCG AAACCTATTTGGAAAGCTGCGGTGTGCCTGAGGGGCAGCGTGGGGCAGCGCTTCTGTTTTTTCAAGCCGCTGCCCATGGC GCACATATTCAAAATCATGACCAAGGAAGAAGGCTGCTATGA
Upstream 100 bases:
>100_bases TGCGCCAATAAAGAGCCGGTGCTGCGATTGGCGTTTCGGGGCCAGATGGTTGCCTGTCACCACCCGCATGATGAACCGGT ATCAGCATGAGGTGGCTTTG
Downstream 100 bases:
>100_bases GTGATTTCGACAGAGTGGTGCGCGGAACCCTCGTGACCGAGGACGGGATCACTGAAAATGGCTTTGTGGCCATCCGCGAC GGTATCATCGCAGCCCTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues METADDFANNAWTAMCNLYRAPNVAQFCIRLQDGYGIDVPLLLLLFYADQQGIGTDIQDLNAFLTDATSWREDVVKPLRT IRQGMKGRYTEHDEVQLRETVKALELRAEQVHVSRLARSFMSHAKPTDESQATETYLESCGVPEGQRGAALLFFQAAAHG AHIQNHDQGRRLL
Sequences:
>Translated_173_residues METADDFANNAWTAMCNLYRAPNVAQFCIRLQDGYGIDVPLLLLLFYADQQGIGTDIQDLNAFLTDATSWREDVVKPLRT IRQGMKGRYTEHDEVQLRETVKALELRAEQVHVSRLARSFMSHAKPTDESQATETYLESCGVPEGQRGAALLFFQAAAHG AHIQNHDQGRRLL >Mature_173_residues METADDFANNAWTAMCNLYRAPNVAQFCIRLQDGYGIDVPLLLLLFYADQQGIGTDIQDLNAFLTDATSWREDVVKPLRT IRQGMKGRYTEHDEVQLRETVKALELRAEQVHVSRLARSFMSHAKPTDESQATETYLESCGVPEGQRGAALLFFQAAAHG AHIQNHDQGRRLL
Specific function: Unknown
COG id: COG5589
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19479; Mature: 19479
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METADDFANNAWTAMCNLYRAPNVAQFCIRLQDGYGIDVPLLLLLFYADQQGIGTDIQDL CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHH NAFLTDATSWREDVVKPLRTIRQGMKGRYTEHDEVQLRETVKALELRAEQVHVSRLARSF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSHAKPTDESQATETYLESCGVPEGQRGAALLFFQAAAHGAHIQNHDQGRRLL HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure METADDFANNAWTAMCNLYRAPNVAQFCIRLQDGYGIDVPLLLLLFYADQQGIGTDIQDL CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHH NAFLTDATSWREDVVKPLRTIRQGMKGRYTEHDEVQLRETVKALELRAEQVHVSRLARSF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSHAKPTDESQATETYLESCGVPEGQRGAALLFFQAAAHGAHIQNHDQGRRLL HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA