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The map label for this gene is yigC [C]

Identifier: 222102807

GI number: 222102807

Start: 472246

End: 473613

Strand: Direct

Name: yigC [C]

Synonym: Avi_7527

Alternate gene names: 222102807

Gene position: 472246-473613 (Clockwise)

Preceding gene: 222102805

Following gene: 222102808

Centisome position: 74.75

GC content: 57.09

Gene sequence:

>1368_bases
GTGAGCGACCAATCATGCCGGACCATGATGGCTGTGTTGCAAAAGCAGGGCGAGTTGCTCATTGTCGATGAAGAAATCGA
TCCCGTTTATGATCTTTCGGCCCTGCTGTCTTTGACACACGAAACACATGCGGTTCGCATCAACAAGGTCAAGGGATCGG
CGTTTCCGGTGTTTGGCAACCTTCTCTCAAGCCTTGATCGTATTGCGCTGGCGCTGGATGTTCCACGCGCATCGATCCAG
TCCACCTTACTGGCGTCGGTGCAAAAGCCGGTTGCGCCGGTCGTTGTGGAAAATGCTCCTGTTCAGCAGCAGCGTTTTGA
AGAGGGTGTGTTGGCGCGCCTGCCTGTTCCGACGTTTTTCGACAAGGAAACCGGCCCCTATATCAGCGCGGGCATGATGA
TTGCCCGTGATCCGGAAACGGGCCTTGGTAATGCCTCTTACGCACGCCTGAAAATCCTGAGCCCAACGGAAGCGTTGATT
GGCATTGCCCCCAACCATCATCTGGCCATCATGGCCCGCAAGGCTGCGGACAAGGGTGAAGCCCTTCCGTTTGCCGTAGT
TTTGGGTGCTCATCCGGCCATCCAGCTGGCCGCCTGTCTCTATTTGGGTCTTGGAGATGACGAGATGCATTGCGCCGGTG
CGCTGCTGGGTGAGCCGGTGCGCATGGCCCGTTGCTACAACAGTGATATTCTGGTGCCTGCTGAGGCCGAGATTGTTATT
GAAGGGCATATCCATGCCAATACGCCGATTGTCGAGGGACTGGTCTCTGAATATCACGGCATGTACGAGGATTATGGCAG
CGGCGTGCTGGCAACGTTTGAGAGCATGTCAGCCCGCGAGGATGCGATGTTTCAGGTGATTTTGCCCGGTTATCACGCTG
AGCACATTTATATTGCCGCCGTTCCCATCGCCGTCAGCCTCAAGGCCCAACTTGCCCGCGTGATCCTCAATGTCGGTGAA
GTGGCGGTGACTGCCTCTGGGTGCGGCCGTACCAATGTTGTGGTGCAGATCGACAAGCCGCGTCCTGGGCAAGCCCGACG
CGCCATGGCCATCTGCTGGGGTGCGGTTTCTATCGTAAAATCCGTGACGGTGGTTGATAGCGATGTTGACCCCTGGGACA
TCAACGCCGTTGAACTGGCGAAATCCACCCGTATGCGGGTGGATCGGGATATTCTGATCATTCCGGGCATGACTGCGGAT
CGTTCCGAGCCGCAGGAAGAGGCAGGCATGGTGGCCAAGATTGGCTATGATGCCACCTGCAAAGCCGGAGACCGCAAGGA
AGGCTATGACAAGGCATTGCCGCCGCAAGCGTCTTATGAGCGCATGAGCCGTGTGATTGCGGCGATCAAGCCGGAGGGCG
CGGTTTGA

Upstream 100 bases:

>100_bases
CCATAGTTCACGGGCATTTCACTGTTCTTCGAAAGTGGTTCCCGTGGCACACAATGCTCGTCCAAACATCTGTCAGCCAG
AAAACAAACCGTATGAAGGT

Downstream 100 bases:

>100_bases
AACGCCTGATCGTTGCGATAACCGGGGCATCGGGTGCCTGTTATGGTGTACGTGCGCTGGAGATGCTCCGCGACATCGAT
GGCATTGAGAGCCATCTGAT

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSDQSCRTMMAVLQKQGELLIVDEEIDPVYDLSALLSLTHETHAVRINKVKGSAFPVFGNLLSSLDRIALALDVPRASIQ
STLLASVQKPVAPVVVENAPVQQQRFEEGVLARLPVPTFFDKETGPYISAGMMIARDPETGLGNASYARLKILSPTEALI
GIAPNHHLAIMARKAADKGEALPFAVVLGAHPAIQLAACLYLGLGDDEMHCAGALLGEPVRMARCYNSDILVPAEAEIVI
EGHIHANTPIVEGLVSEYHGMYEDYGSGVLATFESMSAREDAMFQVILPGYHAEHIYIAAVPIAVSLKAQLARVILNVGE
VAVTASGCGRTNVVVQIDKPRPGQARRAMAICWGAVSIVKSVTVVDSDVDPWDINAVELAKSTRMRVDRDILIIPGMTAD
RSEPQEEAGMVAKIGYDATCKAGDRKEGYDKALPPQASYERMSRVIAAIKPEGAV

Sequences:

>Translated_455_residues
MSDQSCRTMMAVLQKQGELLIVDEEIDPVYDLSALLSLTHETHAVRINKVKGSAFPVFGNLLSSLDRIALALDVPRASIQ
STLLASVQKPVAPVVVENAPVQQQRFEEGVLARLPVPTFFDKETGPYISAGMMIARDPETGLGNASYARLKILSPTEALI
GIAPNHHLAIMARKAADKGEALPFAVVLGAHPAIQLAACLYLGLGDDEMHCAGALLGEPVRMARCYNSDILVPAEAEIVI
EGHIHANTPIVEGLVSEYHGMYEDYGSGVLATFESMSAREDAMFQVILPGYHAEHIYIAAVPIAVSLKAQLARVILNVGE
VAVTASGCGRTNVVVQIDKPRPGQARRAMAICWGAVSIVKSVTVVDSDVDPWDINAVELAKSTRMRVDRDILIIPGMTAD
RSEPQEEAGMVAKIGYDATCKAGDRKEGYDKALPPQASYERMSRVIAAIKPEGAV
>Mature_454_residues
SDQSCRTMMAVLQKQGELLIVDEEIDPVYDLSALLSLTHETHAVRINKVKGSAFPVFGNLLSSLDRIALALDVPRASIQS
TLLASVQKPVAPVVVENAPVQQQRFEEGVLARLPVPTFFDKETGPYISAGMMIARDPETGLGNASYARLKILSPTEALIG
IAPNHHLAIMARKAADKGEALPFAVVLGAHPAIQLAACLYLGLGDDEMHCAGALLGEPVRMARCYNSDILVPAEAEIVIE
GHIHANTPIVEGLVSEYHGMYEDYGSGVLATFESMSAREDAMFQVILPGYHAEHIYIAAVPIAVSLKAQLARVILNVGEV
AVTASGCGRTNVVVQIDKPRPGQARRAMAICWGAVSIVKSVTVVDSDVDPWDINAVELAKSTRMRVDRDILIIPGMTADR
SEPQEEAGMVAKIGYDATCKAGDRKEGYDKALPPQASYERMSRVIAAIKPEGAV

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=455, Percent_Identity=26.5934065934066, Blast_Score=136, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6320748, Length=311, Percent_Identity=30.5466237942122, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 48838; Mature: 48707

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQSCRTMMAVLQKQGELLIVDEEIDPVYDLSALLSLTHETHAVRINKVKGSAFPVFGN
CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHH
LLSSLDRIALALDVPRASIQSTLLASVQKPVAPVVVENAPVQQQRFEEGVLARLPVPTFF
HHHHHHHEEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCEEECCCCCCC
DKETGPYISAGMMIARDPETGLGNASYARLKILSPTEALIGIAPNHHLAIMARKAADKGE
CCCCCCEEEECEEEEECCCCCCCCCCEEEEEEECCCHHHEEECCCCEEEEEEECCCCCCC
ALPFAVVLGAHPAIQLAACLYLGLGDDEMHCAGALLGEPVRMARCYNSDILVPAEAEIVI
CCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCEEEECCCEEEE
EGHIHANTPIVEGLVSEYHGMYEDYGSGVLATFESMSAREDAMFQVILPGYHAEHIYIAA
EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEEEECCCCCCEEEEEE
VPIAVSLKAQLARVILNVGEVAVTASGCGRTNVVVQIDKPRPGQARRAMAICWGAVSIVK
ECEEHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
SVTVVDSDVDPWDINAVELAKSTRMRVDRDILIIPGMTADRSEPQEEAGMVAKIGYDATC
HEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCEEEEECCCCCC
KAGDRKEGYDKALPPQASYERMSRVIAAIKPEGAV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDQSCRTMMAVLQKQGELLIVDEEIDPVYDLSALLSLTHETHAVRINKVKGSAFPVFGN
CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHH
LLSSLDRIALALDVPRASIQSTLLASVQKPVAPVVVENAPVQQQRFEEGVLARLPVPTFF
HHHHHHHEEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCEEECCCCCCC
DKETGPYISAGMMIARDPETGLGNASYARLKILSPTEALIGIAPNHHLAIMARKAADKGE
CCCCCCEEEECEEEEECCCCCCCCCCEEEEEEECCCHHHEEECCCCEEEEEEECCCCCCC
ALPFAVVLGAHPAIQLAACLYLGLGDDEMHCAGALLGEPVRMARCYNSDILVPAEAEIVI
CCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCEEEECCCEEEE
EGHIHANTPIVEGLVSEYHGMYEDYGSGVLATFESMSAREDAMFQVILPGYHAEHIYIAA
EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEEEECCCCCCEEEEEE
VPIAVSLKAQLARVILNVGEVAVTASGCGRTNVVVQIDKPRPGQARRAMAICWGAVSIVK
ECEEHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
SVTVVDSDVDPWDINAVELAKSTRMRVDRDILIIPGMTADRSEPQEEAGMVAKIGYDATC
HEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCEEEEECCCCCC
KAGDRKEGYDKALPPQASYERMSRVIAAIKPEGAV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]