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The map label for this gene is nocM [H]

Identifier: 222102792

GI number: 222102792

Start: 455701

End: 456381

Strand: Reverse

Name: nocM [H]

Synonym: Avi_7506

Alternate gene names: 222102792

Gene position: 456381-455701 (Counterclockwise)

Preceding gene: 222102793

Following gene: 222102791

Centisome position: 72.24

GC content: 54.48

Gene sequence:

>681_bases
ATGGACATCAATATCATCACCTATGCTGTACCCTTTCTTCTCACCGGTGCCAAAACGACCCTGCTGATTGCCGTGTTCGG
CATTGGGTTTGGTCTGCCGTTTGGGGTCTTGCTTGCCTTGGGTCGCGGCTCGCACAATCATGTCCTTCGCCGCACCTGTG
ACTTCTACTGCGCCATCTTTCGTGGCACGCCCATGCTGGTGCAGATTTTTGTGATTTACTACGGACTGGCGCAGATCAGT
TTCGTGCGCCAGAACCCCATCCTCTGGTGGATGATTGGCAATGGGTTACATGCGGCCATTCTCGCCGTCATCCTCAACAC
CTGCGCCTACACCGCCGAAATCTTCCGCTCAGCTCTCCTGTCCCTGCCCCGTGGCCTGATTGAAGCTGCCGAAGCCTGTG
GCATGTCTGGCTGGCATATCTTCATCCGCGTCAAATTTCCGCTCGCCTTGCGTCAGGCTCTGCCTGCTTACAGCAGCGAA
GTGGCGATTATTGTGAAGGAATCCAGCCTTGCCTCCACCATCACCGTGCTGGAAATCACTGGTTACGCCAAGCGATTGAT
GAGTGAGACCTTTGCCATCATGGACATCTTCATCATCACCGCTGCTTTCTATCTCGCCATCAATGTCATTGCCTTGATGG
CGCTGAAATTCATCGAGCGGCGACTGTCGTTCAGCCGATAA

Upstream 100 bases:

>100_bases
GGTGTCGCCGCCCTGTTGTTTTTCACCCTGACGGGTGTGAGCCAGGCGATGTTTGCTCGCGCCGAGCGCTATCTCAATCG
CGGGTTCAACGGGTGCTGAC

Downstream 100 bases:

>100_bases
CCATCCTATTGAAAGACCATCCTATGTCCAAGCTGACCTTTATTGACCAGAACAACCTGCCAGAACCACGCAAGGGCCAA
CCGTTGCCAGACAGACTGGT

Product: ABC transporter membrane spanning protein (nopaline)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDINIITYAVPFLLTGAKTTLLIAVFGIGFGLPFGVLLALGRGSHNHVLRRTCDFYCAIFRGTPMLVQIFVIYYGLAQIS
FVRQNPILWWMIGNGLHAAILAVILNTCAYTAEIFRSALLSLPRGLIEAAEACGMSGWHIFIRVKFPLALRQALPAYSSE
VAIIVKESSLASTITVLEITGYAKRLMSETFAIMDIFIITAAFYLAINVIALMALKFIERRLSFSR

Sequences:

>Translated_226_residues
MDINIITYAVPFLLTGAKTTLLIAVFGIGFGLPFGVLLALGRGSHNHVLRRTCDFYCAIFRGTPMLVQIFVIYYGLAQIS
FVRQNPILWWMIGNGLHAAILAVILNTCAYTAEIFRSALLSLPRGLIEAAEACGMSGWHIFIRVKFPLALRQALPAYSSE
VAIIVKESSLASTITVLEITGYAKRLMSETFAIMDIFIITAAFYLAINVIALMALKFIERRLSFSR
>Mature_226_residues
MDINIITYAVPFLLTGAKTTLLIAVFGIGFGLPFGVLLALGRGSHNHVLRRTCDFYCAIFRGTPMLVQIFVIYYGLAQIS
FVRQNPILWWMIGNGLHAAILAVILNTCAYTAEIFRSALLSLPRGLIEAAEACGMSGWHIFIRVKFPLALRQALPAYSSE
VAIIVKESSLASTITVLEITGYAKRLMSETFAIMDIFIITAAFYLAINVIALMALKFIERRLSFSR

Specific function: Component of the octopine active transport system probably consisting of four subunits:Q, M, P and T [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=203, Percent_Identity=37.9310344827586, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=36.1904761904762, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=33.0275229357798, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787030, Length=223, Percent_Identity=33.6322869955157, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082239, Length=164, Percent_Identity=32.3170731707317, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786874, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=26.3392857142857, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786873, Length=225, Percent_Identity=24.4444444444444, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25003; Mature: 25003

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINIITYAVPFLLTGAKTTLLIAVFGIGFGLPFGVLLALGRGSHNHVLRRTCDFYCAIF
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RGTPMLVQIFVIYYGLAQISFVRQNPILWWMIGNGLHAAILAVILNTCAYTAEIFRSALL
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLPRGLIEAAEACGMSGWHIFIRVKFPLALRQALPAYSSEVAIIVKESSLASTITVLEIT
HCCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHCCCCCCCEEEEEECCCHHHHHHHEEHH
GYAKRLMSETFAIMDIFIITAAFYLAINVIALMALKFIERRLSFSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDINIITYAVPFLLTGAKTTLLIAVFGIGFGLPFGVLLALGRGSHNHVLRRTCDFYCAIF
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RGTPMLVQIFVIYYGLAQISFVRQNPILWWMIGNGLHAAILAVILNTCAYTAEIFRSALL
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLPRGLIEAAEACGMSGWHIFIRVKFPLALRQALPAYSSEVAIIVKESSLASTITVLEIT
HCCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHCCCCCCCEEEEEECCCHHHHHHHEEHH
GYAKRLMSETFAIMDIFIITAAFYLAINVIALMALKFIERRLSFSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA