| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102791
Identifier: 222102791
GI number: 222102791
Start: 455324
End: 455677
Strand: Reverse
Name: 222102791
Synonym: Avi_7505
Alternate gene names: NA
Gene position: 455677-455324 (Counterclockwise)
Preceding gene: 222102792
Following gene: 222102790
Centisome position: 72.13
GC content: 54.8
Gene sequence:
>354_bases ATGTCCAAGCTGACCTTTATTGACCAGAACAACCTGCCAGAACCACGCAAGGGCCAACCGTTGCCAGACAGACTGGTGGA AGGCGATCCACAGTTTCTGACCTGGGATATTGCCCAGACGACAGACGGTCTGGTGTCCTGCGGCGTATGGGAGGTCACGC CTGGTGCCTATCGCTCGATCAAAGGTGAAACCTTTGAATTCTGTGTCATTCTGTCCGGCGTCTCCGAGCTGATTGAAGAT GGATGTGAACCGCGTCGAATTTCTGCGGGCGACTCATTCGTCATGCATCCGGGCTTTACCGGGGTTTGGAAGGTCATCGA AACCACGCGGAAACTCTGGGTCTCTCGCGATTGA
Upstream 100 bases:
>100_bases CTTTCTATCTCGCCATCAATGTCATTGCCTTGATGGCGCTGAAATTCATCGAGCGGCGACTGTCGTTCAGCCGATAACCA TCCTATTGAAAGACCATCCT
Downstream 100 bases:
>100_bases GATTGTCTCACGCATTCCTTCCGATCATATGAAACGGGACATCCTCATGACAAACGCGGCTCAACCATCCGTAAAATCCA CCCCCTACTGGTGGGATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MSKLTFIDQNNLPEPRKGQPLPDRLVEGDPQFLTWDIAQTTDGLVSCGVWEVTPGAYRSIKGETFEFCVILSGVSELIED GCEPRRISAGDSFVMHPGFTGVWKVIETTRKLWVSRD
Sequences:
>Translated_117_residues MSKLTFIDQNNLPEPRKGQPLPDRLVEGDPQFLTWDIAQTTDGLVSCGVWEVTPGAYRSIKGETFEFCVILSGVSELIED GCEPRRISAGDSFVMHPGFTGVWKVIETTRKLWVSRD >Mature_116_residues SKLTFIDQNNLPEPRKGQPLPDRLVEGDPQFLTWDIAQTTDGLVSCGVWEVTPGAYRSIKGETFEFCVILSGVSELIEDG CEPRRISAGDSFVMHPGFTGVWKVIETTRKLWVSRD
Specific function: Unknown
COG id: COG3450
COG function: function code R; Predicted enzyme of the cupin superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13102; Mature: 12971
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLTFIDQNNLPEPRKGQPLPDRLVEGDPQFLTWDIAQTTDGLVSCGVWEVTPGAYRSI CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCEECCEEEECCCHHHCC KGETFEFCVILSGVSELIEDGCEPRRISAGDSFVMHPGFTGVWKVIETTRKLWVSRD CCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKLTFIDQNNLPEPRKGQPLPDRLVEGDPQFLTWDIAQTTDGLVSCGVWEVTPGAYRSI CCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCEECCEEEECCCHHHCC KGETFEFCVILSGVSELIEDGCEPRRISAGDSFVMHPGFTGVWKVIETTRKLWVSRD CCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA