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The map label for this gene is yphD [H]

Identifier: 222102775

GI number: 222102775

Start: 434584

End: 435588

Strand: Direct

Name: yphD [H]

Synonym: Avi_7476

Alternate gene names: 222102775

Gene position: 434584-435588 (Clockwise)

Preceding gene: 222102774

Following gene: 222102776

Centisome position: 68.79

GC content: 57.91

Gene sequence:

>1005_bases
TTGACCGCCTATACTGAACGCGCCAAAGGCTCTGCCTTCGCTGACTTTATCACCGAGAATGCCCAGGTTCTGTCGATTGC
GATTTTCTTCTTTGCCTGCATGGTGTTCTTCTCCGTCACGACCGATACATTTCTCACGCTCGGCAATATTCTCAATGTGG
TGCGACAAGCTGCCCCCATTCTGATTGTTGCCGTTGCCATGACACTGGTGATTGTTACCGGCGGTATTGATCTTTCCGTT
GGCTCGCTGGTGGCGCTGATCAATGCAACGGTGGCGATTGTGCTGGCAACCGGCCTGTCATGGCCCTTGGTCGTGCTGCT
CATGCTGGTTCTGGGCGGCGTGATTGGCCTGATCCAGGGTTGGTTCATTGCCTATCAGGGCATTCCGGCCTTTATCGTCA
CGCTGGCTGGCCTGTCGATCCTGCGCGGCGTGGCGCTCTACATCACCCAAGGCTATTCCATTCCGATCAACGACGTGCCG
GGATTCTTCACGCTGGGTCGTGGCGAGTTCTTAAGTCTTCCGGTTCCGGCCCTGATAGCCATTGCCGTGACAGTCTTTGG
GTTTGTGTTGGTCTCCTCCACCAAATATGGCCGTCAAGTGGTGGCCGTCGGCTCCAATCTGGAAGCGGCGCGCCGGGTAG
GCATGCCAGCCAAGTGGATTGTCGCTTCAGTCTATCTGGTGTCCGGCGTGGCTTGCGCCCTTGCCGGATTGTTGATTGCC
GCCCGGCTTGGCTCCGGCTCTTCCAACGCCGCCGTCGGCTTTGAATTGCAGGTGATTGCGGCCGTGGTTCTGGGTGGCAC
GTCGCTGACGGGCGGGCGCGGCACCATGCTGGGAACACTGCTGGGCACCATGACCATCGCGGTGATCGGCAACGGACTTA
TTCTCATGCATATCTCGCCGTTTTTCACGCAGATTGTCACGGGCGCGATCATTCTGGTGGCGATCTGGCTGAACACCCGG
ATCTTTTCCGCAAATTTCCGCTTTGGCGCAGCGAAGAAGGGGTGA

Upstream 100 bases:

>100_bases
GCATTGCTGTAATGTATGAGGGTACGAAAGTGGCCGAACGCCAGATTGGCAGCACCAACCTTGAAGATCTGGTGAAATTG
ATCGTCGGGGGGGAAAGACA

Downstream 100 bases:

>100_bases
GATATGACCAGTGAACTCTCTGAGGCTCATATCCGCTCCGGCAAAGTGATGACGGTGGCCGGCCCCATCTGCGTGGACGA
GATGGGCGTAACCTTGATGC

Product: ABC transporter membrane spanning protein (sugar)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTAYTERAKGSAFADFITENAQVLSIAIFFFACMVFFSVTTDTFLTLGNILNVVRQAAPILIVAVAMTLVIVTGGIDLSV
GSLVALINATVAIVLATGLSWPLVVLLMLVLGGVIGLIQGWFIAYQGIPAFIVTLAGLSILRGVALYITQGYSIPINDVP
GFFTLGRGEFLSLPVPALIAIAVTVFGFVLVSSTKYGRQVVAVGSNLEAARRVGMPAKWIVASVYLVSGVACALAGLLIA
ARLGSGSSNAAVGFELQVIAAVVLGGTSLTGGRGTMLGTLLGTMTIAVIGNGLILMHISPFFTQIVTGAIILVAIWLNTR
IFSANFRFGAAKKG

Sequences:

>Translated_334_residues
MTAYTERAKGSAFADFITENAQVLSIAIFFFACMVFFSVTTDTFLTLGNILNVVRQAAPILIVAVAMTLVIVTGGIDLSV
GSLVALINATVAIVLATGLSWPLVVLLMLVLGGVIGLIQGWFIAYQGIPAFIVTLAGLSILRGVALYITQGYSIPINDVP
GFFTLGRGEFLSLPVPALIAIAVTVFGFVLVSSTKYGRQVVAVGSNLEAARRVGMPAKWIVASVYLVSGVACALAGLLIA
ARLGSGSSNAAVGFELQVIAAVVLGGTSLTGGRGTMLGTLLGTMTIAVIGNGLILMHISPFFTQIVTGAIILVAIWLNTR
IFSANFRFGAAKKG
>Mature_333_residues
TAYTERAKGSAFADFITENAQVLSIAIFFFACMVFFSVTTDTFLTLGNILNVVRQAAPILIVAVAMTLVIVTGGIDLSVG
SLVALINATVAIVLATGLSWPLVVLLMLVLGGVIGLIQGWFIAYQGIPAFIVTLAGLSILRGVALYITQGYSIPINDVPG
FFTLGRGEFLSLPVPALIAIAVTVFGFVLVSSTKYGRQVVAVGSNLEAARRVGMPAKWIVASVYLVSGVACALAGLLIAA
RLGSGSSNAAVGFELQVIAAVVLGGTSLTGGRGTMLGTLLGTMTIAVIGNGLILMHISPFFTQIVTGAIILVAIWLNTRI
FSANFRFGAAKKG

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=40.5750798722045, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789992, Length=370, Percent_Identity=33.7837837837838, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=38.2758620689655, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI145693152, Length=289, Percent_Identity=35.2941176470588, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082395, Length=284, Percent_Identity=39.0845070422535, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI145693214, Length=270, Percent_Identity=37.037037037037, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=29.8780487804878, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=32.7272727272727, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=31.4685314685315, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787794, Length=298, Percent_Identity=29.5302013422819, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34606; Mature: 34475

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYTERAKGSAFADFITENAQVLSIAIFFFACMVFFSVTTDTFLTLGNILNVVRQAAPI
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIVAVAMTLVIVTGGIDLSVGSLVALINATVAIVLATGLSWPLVVLLMLVLGGVIGLIQG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
WFIAYQGIPAFIVTLAGLSILRGVALYITQGYSIPINDVPGFFTLGRGEFLSLPVPALIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEECCCHHHHHH
IAVTVFGFVLVSSTKYGRQVVAVGSNLEAARRVGMPAKWIVASVYLVSGVACALAGLLIA
HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSGSSNAAVGFELQVIAAVVLGGTSLTGGRGTMLGTLLGTMTIAVIGNGLILMHISP
HHCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
FFTQIVTGAIILVAIWLNTRIFSANFRFGAAKKG
HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCC
>Mature Secondary Structure 
TAYTERAKGSAFADFITENAQVLSIAIFFFACMVFFSVTTDTFLTLGNILNVVRQAAPI
CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIVAVAMTLVIVTGGIDLSVGSLVALINATVAIVLATGLSWPLVVLLMLVLGGVIGLIQG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
WFIAYQGIPAFIVTLAGLSILRGVALYITQGYSIPINDVPGFFTLGRGEFLSLPVPALIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEECCCHHHHHH
IAVTVFGFVLVSSTKYGRQVVAVGSNLEAARRVGMPAKWIVASVYLVSGVACALAGLLIA
HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSGSSNAAVGFELQVIAAVVLGGTSLTGGRGTMLGTLLGTMTIAVIGNGLILMHISP
HHCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
FFTQIVTGAIILVAIWLNTRIFSANFRFGAAKKG
HHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]