| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is braF [H]
Identifier: 222102751
GI number: 222102751
Start: 404635
End: 405354
Strand: Reverse
Name: braF [H]
Synonym: Avi_7437
Alternate gene names: 222102751
Gene position: 405354-404635 (Counterclockwise)
Preceding gene: 222102752
Following gene: 222102750
Centisome position: 64.16
GC content: 56.94
Gene sequence:
>720_bases ATGCCAATCCTTGAACTGAGTGGCGTATCGAAATCGTTTGGTGCCATTGTGGTTGCTGACAACATTGATTTTGCCGTGCA AGAGGGCGAGGCACTGGGGGTTATTGGACCGAATGGCGCGGGCAAATCCACCTTGTTCAATCTGATCAGTGGCAATCTTT CGGTCGCGTCTGGAACAATCCGGTTTGATGGCCGCGACGTGACGACCATGCCGCCCATGCAGCGTTGTTTTGCCGGAATG GGACGAACTTTCCAGATCCCCCAGCCCTTTGAGCGGCTCACCGTCTTTGAAAACCTCTTGGTTGCCGGGGCCTTTGGCGC GCAGTCCAGTGAGGCAGAGATGACCGATTTCTGTGCCGACATTCTTGTTGAAACCGGTTTGATTGCCAAAGCCAATGCAC TTGCAGGCTCACTGGGCCTTCTGGAGCGCAAGCGGCTGGAGCTGGCCCGCGCACTGGCCACAAAGCCAAAACTGCTGCTT CTTGACGAGATAGCGGGTGGATTGACGGAAGGCGAATGTCGTCAACTCGTCGCCACCATAAGGAGCGTTCACCAGCGTGG CGTCGCAGTCATCTGGATAGAACATGTGCTGCACGCGCTGACAGCCGTCGTGGAGCGCATCCTTGTGCTGAACTTCGGCC GGGTGCTGGGCATTGGCGAACCGCAGGCGATCATGGCCTCGCGAGAGGTTCGCGAAATCTATCTGGGTCTGGAGGTATGA
Upstream 100 bases:
>100_bases CCGTCTGTGCCGCTGGGCGGCAAGCTCGAACCTCTCGCGTGAGCGCAAACGTCCCGCTCCCACACTGCGGAGCGGGTGCG TTTTCAACAGGAGCCTTTGA
Downstream 100 bases:
>100_bases TGACCAGTCTGCTCGAAACACGCGGCCTCACGGCATTCTACGGCGACTTTCAGGCTCTGTTCGGCGTCGATCTCAGGCTG GACGCCGGAGAAATGATTGC
Product: ABC transporter nucleotide binding/ATPase protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MPILELSGVSKSFGAIVVADNIDFAVQEGEALGVIGPNGAGKSTLFNLISGNLSVASGTIRFDGRDVTTMPPMQRCFAGM GRTFQIPQPFERLTVFENLLVAGAFGAQSSEAEMTDFCADILVETGLIAKANALAGSLGLLERKRLELARALATKPKLLL LDEIAGGLTEGECRQLVATIRSVHQRGVAVIWIEHVLHALTAVVERILVLNFGRVLGIGEPQAIMASREVREIYLGLEV
Sequences:
>Translated_239_residues MPILELSGVSKSFGAIVVADNIDFAVQEGEALGVIGPNGAGKSTLFNLISGNLSVASGTIRFDGRDVTTMPPMQRCFAGM GRTFQIPQPFERLTVFENLLVAGAFGAQSSEAEMTDFCADILVETGLIAKANALAGSLGLLERKRLELARALATKPKLLL LDEIAGGLTEGECRQLVATIRSVHQRGVAVIWIEHVLHALTAVVERILVLNFGRVLGIGEPQAIMASREVREIYLGLEV >Mature_238_residues PILELSGVSKSFGAIVVADNIDFAVQEGEALGVIGPNGAGKSTLFNLISGNLSVASGTIRFDGRDVTTMPPMQRCFAGMG RTFQIPQPFERLTVFENLLVAGAFGAQSSEAEMTDFCADILVETGLIAKANALAGSLGLLERKRLELARALATKPKLLLL DEIAGGLTEGECRQLVATIRSVHQRGVAVIWIEHVLHALTAVVERILVLNFGRVLGIGEPQAIMASREVREIYLGLEV
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI46592956, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI46592978, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI46592915, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI46592964, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI46592971, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI46592898, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=27.6497695852535, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=27.6497695852535, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI31657092, Length=228, Percent_Identity=28.0701754385965, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI215820660, Length=193, Percent_Identity=29.0155440414508, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI20143975, Length=193, Percent_Identity=29.0155440414508, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI105990541, Length=228, Percent_Identity=29.3859649122807, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27262624, Length=207, Percent_Identity=27.536231884058, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27262626, Length=207, Percent_Identity=27.536231884058, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=28.1553398058252, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI116734710, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI171184400, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=25.3456221198157, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=25.3456221198157, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9955963, Length=222, Percent_Identity=27.9279279279279, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=33.7301587301587, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=29.6610169491525, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=28.5714285714286, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787792, Length=215, Percent_Identity=30.2325581395349, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1789991, Length=251, Percent_Identity=29.0836653386454, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=28.8135593220339, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=29.7777777777778, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1788761, Length=230, Percent_Identity=29.1304347826087, Blast_Score=97, Evalue=6e-22, Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=28.3185840707965, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=32.994923857868, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1788472, Length=226, Percent_Identity=27.4336283185841, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=28.0542986425339, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790525, Length=218, Percent_Identity=26.1467889908257, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1790190, Length=217, Percent_Identity=24.8847926267281, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789672, Length=226, Percent_Identity=25.6637168141593, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=25.3333333333333, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=31.651376146789, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=29.9559471365639, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=27.0042194092827, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1788897, Length=227, Percent_Identity=26.431718061674, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=29.7413793103448, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788210, Length=218, Percent_Identity=24.7706422018349, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=25.7918552036199, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=27.1604938271605, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=29.2792792792793, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=27.3469387755102, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=228, Percent_Identity=28.0701754385965, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=28.2178217821782, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=27.3092369477912, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082267, Length=224, Percent_Identity=29.0178571428571, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786563, Length=220, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=25.2252252252252, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787105, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=26.7281105990783, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI48994997, Length=229, Percent_Identity=26.2008733624454, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=24.1071428571429, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1786653, Length=226, Percent_Identity=28.3185840707965, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI2367384, Length=58, Percent_Identity=50, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787500, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788053, Length=188, Percent_Identity=29.7872340425532, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=226, Percent_Identity=26.9911504424779, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=243, Percent_Identity=27.1604938271605, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786803, Length=229, Percent_Identity=22.2707423580786, Blast_Score=61, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=28.2296650717703, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71983510, Length=238, Percent_Identity=26.890756302521, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983523, Length=238, Percent_Identity=26.890756302521, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983516, Length=238, Percent_Identity=26.890756302521, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71996809, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193211015, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193211017, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71988343, Length=235, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=26.2376237623762, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17510237, Length=223, Percent_Identity=20.627802690583, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565938, Length=221, Percent_Identity=28.0542986425339, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=222, Percent_Identity=26.5765765765766, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI212646699, Length=218, Percent_Identity=27.0642201834862, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551702, Length=214, Percent_Identity=28.9719626168224, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17551700, Length=214, Percent_Identity=28.9719626168224, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25146777, Length=212, Percent_Identity=25.9433962264151, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322980, Length=235, Percent_Identity=26.3829787234043, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=24.4239631336406, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI19920532, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=221, Percent_Identity=27.6018099547511, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24643674, Length=222, Percent_Identity=23.8738738738739, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI28574533, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076684, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581617, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581615, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076682, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647959, Length=221, Percent_Identity=28.9592760180996, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25512; Mature: 25381
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPILELSGVSKSFGAIVVADNIDFAVQEGEALGVIGPNGAGKSTLFNLISGNLSVASGTI CCCEECCCCCCCCCEEEEECCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEE RFDGRDVTTMPPMQRCFAGMGRTFQIPQPFERLTVFENLLVAGAFGAQSSEAEMTDFCAD EECCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ILVETGLIAKANALAGSLGLLERKRLELARALATKPKLLLLDEIAGGLTEGECRQLVATI HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHHHHH RSVHQRGVAVIWIEHVLHALTAVVERILVLNFGRVLGIGEPQAIMASREVREIYLGLEV HHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PILELSGVSKSFGAIVVADNIDFAVQEGEALGVIGPNGAGKSTLFNLISGNLSVASGTI CCEECCCCCCCCCEEEEECCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEE RFDGRDVTTMPPMQRCFAGMGRTFQIPQPFERLTVFENLLVAGAFGAQSSEAEMTDFCAD EECCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ILVETGLIAKANALAGSLGLLERKRLELARALATKPKLLLLDEIAGGLTEGECRQLVATI HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHHHHH RSVHQRGVAVIWIEHVLHALTAVVERILVLNFGRVLGIGEPQAIMASREVREIYLGLEV HHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]