| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is hetN [H]
Identifier: 222102738
GI number: 222102738
Start: 392484
End: 393329
Strand: Direct
Name: hetN [H]
Synonym: Avi_7421
Alternate gene names: 222102738
Gene position: 392484-393329 (Clockwise)
Preceding gene: 222102737
Following gene: 222102739
Centisome position: 62.12
GC content: 57.92
Gene sequence:
>846_bases ATGAAATTCGACGGCAAATTGGTACTCATAACGGGTGCCGCGACCGGTATTGGTCGCGCAACTGCACGAAGCCTTGGCCA GTTGGGTGCCCGGGTGGTTATCGTGGATATCAACGAGGACGGCGCGAAAGAAGCGGCCAAGTCGGTGCCCGGTGGCAAGG CGGTGGCCTTCCGCTGTAATCTCGCCAACGATCAGGAGGTCGCTGACTTGCAGCGACAGGTCGAAAGCAGCTGCGGTGTG GTCGATATCCTCATCAACAATGCCGCTAAGCCTCCAGTCACCGGCTCTATCTTGAATGTTGGTCTCGATCAGTTTCAAGC CGCATTTGATGTCAATGTGCTGGGCTATCTTCGCACCATCAAGGCTTTTTTGCCGGGAATGCTGGAGCGCAACGCGGGCC ACATCGTCAACACCTCGTCTGCATTGGCGCTGCTTCCGGATCCACCGATCCGCTTCATGGGCCCCTATATCACCTCAAAG GGCGCCCAGCTTTCCCTGAGCTATGCCTATGCGCATGCCCTAAGCGGAACCGGTGTCGGTATCTCGGTTTTCTGCCCCGG TATTACGGCAACCGCCGAGATGCCGGGCGGTGTCCCGCCGAGCCCACCGCCGGGAATGCCTGCACCAGAAGAATTTTCCA TCGGTGTTCCGACGCGACGCACTGTGCGTGTGCCGGCAGAACATGCTGCAAAGGTCTTGATTGAAGGCCTTGAGCGGGAT GCCTTCCTGATCTGCTCGCAGTCCAATTATCAGCCAGACCTCATCGCATTCGCATCGGCCGGTTATGATCCAGCTTCGAT TGTTGGAGAGGCACTGGGCGAGGCAAAACGAAGCTTGGGGGCATAA
Upstream 100 bases:
>100_bases ACACCGGCTGCCTAGAGTTTGTCAAGGAAAAGCGGACTCCGATCTCCCTGAAAAGACAAACAAAAACAATAGGCTATAGC TGCAACATAGGATGCAACGG
Downstream 100 bases:
>100_bases GGCGATGGGACGCATAAAATATTTGCGAATGGAGGATCTCCAGCCCGAGCATCGCAACATCCCGCGCATGACGTCGAATA TTACGCGGGCGGTTGCGCAT
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MKFDGKLVLITGAATGIGRATARSLGQLGARVVIVDINEDGAKEAAKSVPGGKAVAFRCNLANDQEVADLQRQVESSCGV VDILINNAAKPPVTGSILNVGLDQFQAAFDVNVLGYLRTIKAFLPGMLERNAGHIVNTSSALALLPDPPIRFMGPYITSK GAQLSLSYAYAHALSGTGVGISVFCPGITATAEMPGGVPPSPPPGMPAPEEFSIGVPTRRTVRVPAEHAAKVLIEGLERD AFLICSQSNYQPDLIAFASAGYDPASIVGEALGEAKRSLGA
Sequences:
>Translated_281_residues MKFDGKLVLITGAATGIGRATARSLGQLGARVVIVDINEDGAKEAAKSVPGGKAVAFRCNLANDQEVADLQRQVESSCGV VDILINNAAKPPVTGSILNVGLDQFQAAFDVNVLGYLRTIKAFLPGMLERNAGHIVNTSSALALLPDPPIRFMGPYITSK GAQLSLSYAYAHALSGTGVGISVFCPGITATAEMPGGVPPSPPPGMPAPEEFSIGVPTRRTVRVPAEHAAKVLIEGLERD AFLICSQSNYQPDLIAFASAGYDPASIVGEALGEAKRSLGA >Mature_281_residues MKFDGKLVLITGAATGIGRATARSLGQLGARVVIVDINEDGAKEAAKSVPGGKAVAFRCNLANDQEVADLQRQVESSCGV VDILINNAAKPPVTGSILNVGLDQFQAAFDVNVLGYLRTIKAFLPGMLERNAGHIVNTSSALALLPDPPIRFMGPYITSK GAQLSLSYAYAHALSGTGVGISVFCPGITATAEMPGGVPPSPPPGMPAPEEFSIGVPTRRTVRVPAEHAAKVLIEGLERD AFLICSQSNYQPDLIAFASAGYDPASIVGEALGEAKRSLGA
Specific function: May be involved in repressing heterocyst differentiation and may be essential for preventing all vegetative cells from differentiating [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=35.5140186915888, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=33.8541666666667, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI40807363, Length=213, Percent_Identity=32.3943661971831, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI310128830, Length=220, Percent_Identity=33.1818181818182, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI310115468, Length=220, Percent_Identity=33.1818181818182, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=31.0526315789474, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=29.5698924731183, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31543615, Length=189, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI109715829, Length=203, Percent_Identity=31.0344827586207, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI25282469, Length=239, Percent_Identity=26.7782426778243, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=31.4285714285714, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=30.8411214953271, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI224922801, Length=153, Percent_Identity=30.0653594771242, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=28.4848484848485, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI19923817, Length=146, Percent_Identity=26.7123287671233, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=29.6442687747036, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787905, Length=149, Percent_Identity=34.2281879194631, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787335, Length=209, Percent_Identity=24.8803827751196, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790717, Length=192, Percent_Identity=30.2083333333333, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789378, Length=233, Percent_Identity=27.8969957081545, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787820, Length=190, Percent_Identity=25.2631578947368, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203117, Length=217, Percent_Identity=35.9447004608295, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193203115, Length=213, Percent_Identity=36.150234741784, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17564282, Length=248, Percent_Identity=31.8548387096774, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17567345, Length=139, Percent_Identity=34.5323741007194, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17508895, Length=138, Percent_Identity=37.6811594202899, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.5019157088123, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17560220, Length=203, Percent_Identity=30.0492610837438, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17544670, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI25147288, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI281364892, Length=161, Percent_Identity=37.888198757764, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24640492, Length=144, Percent_Identity=34.7222222222222, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21355631, Length=147, Percent_Identity=32.6530612244898, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24649181, Length=164, Percent_Identity=30.4878048780488, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581726, Length=216, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI221510726, Length=191, Percent_Identity=31.413612565445, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641232, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355319, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17737361, Length=218, Percent_Identity=29.8165137614679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641388, Length=215, Percent_Identity=28.8372093023256, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=203, Percent_Identity=26.1083743842365, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29081; Mature: 29081
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFDGKLVLITGAATGIGRATARSLGQLGARVVIVDINEDGAKEAAKSVPGGKAVAFRCN CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEC LANDQEVADLQRQVESSCGVVDILINNAAKPPVTGSILNVGLDQFQAAFDVNVLGYLRTI CCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHH KAFLPGMLERNAGHIVNTSSALALLPDPPIRFMGPYITSKGAQLSLSYAYAHALSGTGVG HHHHHHHHHCCCCCEEECCCCEEECCCCCHHHCCCCCCCCCCEEEEEEHHHHHHCCCCCE ISVFCPGITATAEMPGGVPPSPPPGMPAPEEFSIGVPTRRTVRVPAEHAAKVLIEGLERD EEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCC AFLICSQSNYQPDLIAFASAGYDPASIVGEALGEAKRSLGA EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKFDGKLVLITGAATGIGRATARSLGQLGARVVIVDINEDGAKEAAKSVPGGKAVAFRCN CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEC LANDQEVADLQRQVESSCGVVDILINNAAKPPVTGSILNVGLDQFQAAFDVNVLGYLRTI CCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHH KAFLPGMLERNAGHIVNTSSALALLPDPPIRFMGPYITSKGAQLSLSYAYAHALSGTGVG HHHHHHHHHCCCCCEEECCCCEEECCCCCHHHCCCCCCCCCCEEEEEEHHHHHHCCCCCE ISVFCPGITATAEMPGGVPPSPPPGMPAPEEFSIGVPTRRTVRVPAEHAAKVLIEGLERD EEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCC AFLICSQSNYQPDLIAFASAGYDPASIVGEALGEAKRSLGA EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8157596; 11759840 [H]