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The map label for this gene is nrdF [H]

Identifier: 222102712

GI number: 222102712

Start: 362792

End: 363781

Strand: Direct

Name: nrdF [H]

Synonym: Avi_7388

Alternate gene names: 222102712

Gene position: 362792-363781 (Clockwise)

Preceding gene: 222102711

Following gene: 222102714

Centisome position: 57.42

GC content: 54.85

Gene sequence:

>990_bases
ATGAACATACAGATGAAGACCAACACCCCGACGCAAACCAAGCCGGTGCGAGCGATCAACTGGAACCGCATCAACGACGA
CAAGGACCTGGAGGTCTGGAACAGGCTGACCGGTAATTTCTGGCTGCCGGAGAAGGTGCCGTTGTCAAACGACATTCCAT
CCTGGGCGGCGTTGAAGCCGGAAGAACAACAGTTGACCATCCGCGTCTTCACGGGGCTGACCCTGCTCGATACCATACAG
ACGAGCATCGGTGCGCCAACATTGATGGAGGATTCCATCACGCCGCATGAGGAGGCGGTCTATTCGAACATTTCGTTCAT
GGAAGCGGTGCATGCCCGTTCCTATTCCTCGATCTTTTCGACCCTGTGTTCGACATCCGACGTGGATGATGCCTATCGCT
GGTCCGAAGAAAACGAGTTTCTGCAAAAGAAGTCGGCGCTGATCCTCGAACACTACCGCAATCCTGACCCGCTGAAACGC
AAGATCGCCAGTGTGTTCCTGGAAAGCTTCCTGTTTTACTCCGGCTTCTATCTGCCGATGTTTTGGTCGAGCCGCGCCAG
GCTCACCAACACGGCAGACATGATCCGTCTCATCATCCGCGACGAGGCTGTACATGGCTATTACATCGGCTACAAGTTTC
AGCGTGGTCTCGAGCCCTTAAGCGAGGAGCAGCGGCAGGAAACCAAGGACTTCGCCTTCGACCTGCTGCTTGAGCTCTAC
GACAACGAGGCCAAATACACCGAGGCGCTCTATGACGGTGTCGGACTGACAGAGGACGTCAAAAAATTTCTGCATTACAA
CGCGAACAAGGCGCTGATGAACCTCGGCTACGAGGCTCTGTTTCCGCCGGAGGCCTGCAAGGTCAATCCGGCAATCCTGT
CGGCACTCTCGCCGAATGCCGATGAGAATCATGATTTCTTTTCGGGCTCAGGCTCGTCCTATGTCATCGGCAAGGCAGTT
GCGACTGAGGACGAGGACTGGGATTTTTAA

Upstream 100 bases:

>100_bases
GCATCAAGACCATCTATTACATTCGCCTTCGCCAGATGGCGCTGGCCGGCACGCAAGTGCAGGGCTGCGTATCCTGCGCG
CTGTGAGATCGAGATATCAC

Downstream 100 bases:

>100_bases
GCACAATACAGCCTGATATTTTACGCCTTCCCTCGACTATCAACCATGGGGTCGTAGGTGCGATCCCCTCAAGGCTGCAC
CCGAGATGTCGATCAGACAT

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNIQMKTNTPTQTKPVRAINWNRINDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAALKPEEQQLTIRVFTGLTLLDTIQ
TSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSEENEFLQKKSALILEHYRNPDPLKR
KIASVFLESFLFYSGFYLPMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLELY
DNEAKYTEALYDGVGLTEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV
ATEDEDWDF

Sequences:

>Translated_329_residues
MNIQMKTNTPTQTKPVRAINWNRINDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAALKPEEQQLTIRVFTGLTLLDTIQ
TSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSEENEFLQKKSALILEHYRNPDPLKR
KIASVFLESFLFYSGFYLPMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLELY
DNEAKYTEALYDGVGLTEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV
ATEDEDWDF
>Mature_329_residues
MNIQMKTNTPTQTKPVRAINWNRINDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAALKPEEQQLTIRVFTGLTLLDTIQ
TSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSEENEFLQKKSALILEHYRNPDPLKR
KIASVFLESFLFYSGFYLPMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLELY
DNEAKYTEALYDGVGLTEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV
ATEDEDWDF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=314, Percent_Identity=76.4331210191083, Blast_Score=503, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 37702; Mature: 37702

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQMKTNTPTQTKPVRAINWNRINDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAALKP
CCEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
EEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFS
CCCEEEEEEECCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLCSTSDVDDAYRWSEENEFLQKKSALILEHYRNPDPLKRKIASVFLESFLFYSGFYLPM
HHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
FWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLELY
HHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
DNEAKYTEALYDGVGLTEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSPNA
CCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHCCCCCHHCCCHHHHHHCCCCC
DENHDFFSGSGSSYVIGKAVATEDEDWDF
CCCCCCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MNIQMKTNTPTQTKPVRAINWNRINDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAALKP
CCEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
EEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFS
CCCEEEEEEECCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLCSTSDVDDAYRWSEENEFLQKKSALILEHYRNPDPLKRKIASVFLESFLFYSGFYLPM
HHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
FWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLELY
HHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
DNEAKYTEALYDGVGLTEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSPNA
CCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHCCCCCHHCCCHHHHHHCCCCC
DENHDFFSGSGSSYVIGKAVATEDEDWDF
CCCCCCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]