| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102699
Identifier: 222102699
GI number: 222102699
Start: 347511
End: 348617
Strand: Direct
Name: 222102699
Synonym: Avi_7373
Alternate gene names: NA
Gene position: 347511-348617 (Clockwise)
Preceding gene: 222102698
Following gene: 222102705
Centisome position: 55.01
GC content: 52.39
Gene sequence:
>1107_bases ATGCAATGGAACTGGCAACTGCCCGATTGGCCAAACTTCTCCTATGACATTGAGAACATGGCCCCTTTGGAGCAAAGGTT TCTCCAGTCATCCGGTGAGGTTATCGGTGCTGTCAGGCATTTCAGTGACGACGACAGCAACCAATTGCGGATTGAGTTGC TGAGCGACGAAGCCATTAAAACGTCGGAGATCGAAGGCGAGTTCCTTGATCGAGCAAGCGTACAGTCGTCGCTGCGCCGA CAATTTGGTCTCAATACAGACAATCGTCCGGTCCGACCACAAGAACGTGGGATCGCAGAGATGATGGCCGACGTCTATAA AAATTGGTCCGGCCCACTCCAGCATGAGGACCTTTTCCGTTGGCACTCGATGCTGATGGCGGGAACCCGATATATCGAAA CAATTTGCGCCTACCGACGCCATAATGATGCAATGCAGATCGTCTCAGGTCGCCTGGACAAGCCTATAATCCATTTTGAG GCACCGCCATCCAGCCAGGTGGCTGCGGAAATGGCGCTTTTCATCGACTGGTTCAATCGGTCGGGGCCAGGCGGGTCAGT TCCATTATCTGCGCTGACCCGCGCAGCCATCGGACACCTCTATTTCGAAAGCATCCATCCCTTTGAGGACGGTAACGGTA GAATTGGACGCGCGTTAGCTGAAAAATCGCTAGCACAGAACATTGGGCAACCAAGTCTGATTTCGCTTGCCTTTACAATT GAGCGTGACCGAAAGGCCTATTACTGCGAACTTGAACGCCATCAGCGAAAGCTCGATATCACCGGATGGATTGTCTATTT TTCGCAGACAATCCTGGATGCCCAACAGGCGACGATTGATCGCATTGCCTTCTTCATTCAAAAGGCAAAATTCTACGATC GGTTTCGGGACCGGCTTAATGAACGCCAGGAAAAAGTCATCGCCCGTATTTTTCGAGAGGGTATTGCTGGTTTTAAAGGC GGGTTGAGCGCGGAAAATTACATTTCAATCACGGCCACATCGCGTGCGACAGCAACGCGTGACCTCCAGCACCTTGTCGA GATCGGCGCATTCACGCGCACCGGAGAGCGGCGACACACGCGGTACACCCTAACACTCCAAAGCTGA
Upstream 100 bases:
>100_bases GGGTACACAGCAGATTTCAAGCCCAGATGATCGATAGAATGACTTGCAATAGCTCACCAATCAGCATAATTTTGAGTTAT AGAAAAGGCGGCTATAACTC
Downstream 100 bases:
>100_bases CCAGCATTTCAAGAGGCCAACATTTCGATCGGATTATCTGCTCGTCGTTTCGTCCAGGTGTCGGAGAACCCCAAGGATAT TGAGCGCATTTACACGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Fic Family Protein; Xin-Antitoxin System Toxin Component Fic Family; Filamentation Induced By Camp Protein Fic; Cell Filamentation Protein; Fic Protein Family; Filamentation Induced By CAMP Protein Family Protein; Fic Protein; -Like Protein; Homolog; Transcription Regulator
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MQWNWQLPDWPNFSYDIENMAPLEQRFLQSSGEVIGAVRHFSDDDSNQLRIELLSDEAIKTSEIEGEFLDRASVQSSLRR QFGLNTDNRPVRPQERGIAEMMADVYKNWSGPLQHEDLFRWHSMLMAGTRYIETICAYRRHNDAMQIVSGRLDKPIIHFE APPSSQVAAEMALFIDWFNRSGPGGSVPLSALTRAAIGHLYFESIHPFEDGNGRIGRALAEKSLAQNIGQPSLISLAFTI ERDRKAYYCELERHQRKLDITGWIVYFSQTILDAQQATIDRIAFFIQKAKFYDRFRDRLNERQEKVIARIFREGIAGFKG GLSAENYISITATSRATATRDLQHLVEIGAFTRTGERRHTRYTLTLQS
Sequences:
>Translated_368_residues MQWNWQLPDWPNFSYDIENMAPLEQRFLQSSGEVIGAVRHFSDDDSNQLRIELLSDEAIKTSEIEGEFLDRASVQSSLRR QFGLNTDNRPVRPQERGIAEMMADVYKNWSGPLQHEDLFRWHSMLMAGTRYIETICAYRRHNDAMQIVSGRLDKPIIHFE APPSSQVAAEMALFIDWFNRSGPGGSVPLSALTRAAIGHLYFESIHPFEDGNGRIGRALAEKSLAQNIGQPSLISLAFTI ERDRKAYYCELERHQRKLDITGWIVYFSQTILDAQQATIDRIAFFIQKAKFYDRFRDRLNERQEKVIARIFREGIAGFKG GLSAENYISITATSRATATRDLQHLVEIGAFTRTGERRHTRYTLTLQS >Mature_368_residues MQWNWQLPDWPNFSYDIENMAPLEQRFLQSSGEVIGAVRHFSDDDSNQLRIELLSDEAIKTSEIEGEFLDRASVQSSLRR QFGLNTDNRPVRPQERGIAEMMADVYKNWSGPLQHEDLFRWHSMLMAGTRYIETICAYRRHNDAMQIVSGRLDKPIIHFE APPSSQVAAEMALFIDWFNRSGPGGSVPLSALTRAAIGHLYFESIHPFEDGNGRIGRALAEKSLAQNIGQPSLISLAFTI ERDRKAYYCELERHQRKLDITGWIVYFSQTILDAQQATIDRIAFFIQKAKFYDRFRDRLNERQEKVIARIFREGIAGFKG GLSAENYISITATSRATATRDLQHLVEIGAFTRTGERRHTRYTLTLQS
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42284; Mature: 42284
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWNWQLPDWPNFSYDIENMAPLEQRFLQSSGEVIGAVRHFSDDDSNQLRIELLSDEAIK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCH TSEIEGEFLDRASVQSSLRRQFGLNTDNRPVRPQERGIAEMMADVYKNWSGPLQHEDLFR HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHCCCCCCCHHHHHH WHSMLMAGTRYIETICAYRRHNDAMQIVSGRLDKPIIHFEAPPSSQVAAEMALFIDWFNR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC SGPGGSVPLSALTRAAIGHLYFESIHPFEDGNGRIGRALAEKSLAQNIGQPSLISLAFTI CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE ERDRKAYYCELERHQRKLDITGWIVYFSQTILDAQQATIDRIAFFIQKAKFYDRFRDRLN ECCCCCEEEEHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERQEKVIARIFREGIAGFKGGLSAENYISITATSRATATRDLQHLVEIGAFTRTGERRHT HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCE RYTLTLQS EEEEEECC >Mature Secondary Structure MQWNWQLPDWPNFSYDIENMAPLEQRFLQSSGEVIGAVRHFSDDDSNQLRIELLSDEAIK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCH TSEIEGEFLDRASVQSSLRRQFGLNTDNRPVRPQERGIAEMMADVYKNWSGPLQHEDLFR HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHCCCCCCCHHHHHH WHSMLMAGTRYIETICAYRRHNDAMQIVSGRLDKPIIHFEAPPSSQVAAEMALFIDWFNR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC SGPGGSVPLSALTRAAIGHLYFESIHPFEDGNGRIGRALAEKSLAQNIGQPSLISLAFTI CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE ERDRKAYYCELERHQRKLDITGWIVYFSQTILDAQQATIDRIAFFIQKAKFYDRFRDRLN ECCCCCEEEEHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERQEKVIARIFREGIAGFKGGLSAENYISITATSRATATRDLQHLVEIGAFTRTGERRHT HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCE RYTLTLQS EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA