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The map label for this gene is ycjO [C]

Identifier: 222102669

GI number: 222102669

Start: 313973

End: 314815

Strand: Reverse

Name: ycjO [C]

Synonym: Avi_7336

Alternate gene names: 222102669

Gene position: 314815-313973 (Counterclockwise)

Preceding gene: 222102670

Following gene: 222102668

Centisome position: 49.83

GC content: 58.24

Gene sequence:

>843_bases
ATGCCGCTGATCTTGGTGCTCGGCATTTTCTACCTTTATCCGGTGTTGGATGTGGCGCGCCTTGCCTTCACCAGAGCCAC
CCTGCTCGGGGATGACGGTGGCTACACCATCACAACATTGATCAACACGCTGACCCGCGCAGAAATTCCGCAGATCCTGT
GGGTCACGCTCACCTTCACGGCGGGTTCGGTTCTGGCGCAGCAACTGTTAGGCCTTGTGATCGCATTGGTGGTGGTGCGG
GCAGAAAGACGCGGTCTGTTCGGTGCGACAATCCTGCGAACCACGGCGCTGATTGCCTGGGTGGTGCCGGGCATTGCTGG
CGGCATTATCTGGAAAATGCTGTTTAACGAAGCGCCGTTTGGCGGGCTGAACAGCCTGCTTCGACTTGTGGGAGCTGGCC
CCGTACAATGGCTCTCCGATCCCAACCTCGTGATGTGGTCGGTGGTGTTGTCGAATGTCTGGCGCGGAACCGCCTTTTCC
ATGGTGGTGATGTATGCGGCCATCAAGGCGATTGATCCGGTGCTTTATGAGGCCGCGGCGGTGGATGGGGCGCGGGCCGA
TCAGCGGCTGCGCTATGTCACTCTGCCGCAGCTAAAATCGGCCATTCTGGTCAATCTGATTTTGATCACCATTCAGACGC
TCAACACCTTCGATGCGATCATCTCCCTCACCGGCGGCGGACCGGGACGGGTGACAGAGGTACTGTCGCTCTACACGTTC
AATGTGGTGTTTCGCAATTATGATCTGGCGGCGGGCGCTGCCCTGTCCATCCTGATGCTGGTAATCTCGCTGACGCTTGC
CTTGATCTATGCCGCCTTCCTGCCAAAGGGAGATGACCAATGA

Upstream 100 bases:

>100_bases
AATCCAGAAGGTGCACTCCATGGCAACAATCAGCTTGCAGGCGGGCAAACAAATGGGTGCCGCCCGAAGCCGTCACAGAC
CAAAGGCAGCGCCCTGGCTT

Downstream 100 bases:

>100_bases
AAACCCGCACAAGTGAGCGCCTCGGCGATCTGCTGAGCTATATTTTTATGGCCATTACCTTTGCTTTTTTCGCATGGCCG
CTGCTGTGGCTTTTGTCTTT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MPLILVLGIFYLYPVLDVARLAFTRATLLGDDGGYTITTLINTLTRAEIPQILWVTLTFTAGSVLAQQLLGLVIALVVVR
AERRGLFGATILRTTALIAWVVPGIAGGIIWKMLFNEAPFGGLNSLLRLVGAGPVQWLSDPNLVMWSVVLSNVWRGTAFS
MVVMYAAIKAIDPVLYEAAAVDGARADQRLRYVTLPQLKSAILVNLILITIQTLNTFDAIISLTGGGPGRVTEVLSLYTF
NVVFRNYDLAAGAALSILMLVISLTLALIYAAFLPKGDDQ

Sequences:

>Translated_280_residues
MPLILVLGIFYLYPVLDVARLAFTRATLLGDDGGYTITTLINTLTRAEIPQILWVTLTFTAGSVLAQQLLGLVIALVVVR
AERRGLFGATILRTTALIAWVVPGIAGGIIWKMLFNEAPFGGLNSLLRLVGAGPVQWLSDPNLVMWSVVLSNVWRGTAFS
MVVMYAAIKAIDPVLYEAAAVDGARADQRLRYVTLPQLKSAILVNLILITIQTLNTFDAIISLTGGGPGRVTEVLSLYTF
NVVFRNYDLAAGAALSILMLVISLTLALIYAAFLPKGDDQ
>Mature_279_residues
PLILVLGIFYLYPVLDVARLAFTRATLLGDDGGYTITTLINTLTRAEIPQILWVTLTFTAGSVLAQQLLGLVIALVVVRA
ERRGLFGATILRTTALIAWVVPGIAGGIIWKMLFNEAPFGGLNSLLRLVGAGPVQWLSDPNLVMWSVVLSNVWRGTAFSM
VVMYAAIKAIDPVLYEAAAVDGARADQRLRYVTLPQLKSAILVNLILITIQTLNTFDAIISLTGGGPGRVTEVLSLYTFN
VVFRNYDLAAGAALSILMLVISLTLALIYAAFLPKGDDQ

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=241, Percent_Identity=29.8755186721992, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790465, Length=263, Percent_Identity=30.7984790874525, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789861, Length=275, Percent_Identity=23.2727272727273, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30207; Mature: 30076

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLILVLGIFYLYPVLDVARLAFTRATLLGDDGGYTITTLINTLTRAEIPQILWVTLTFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHH
AGSVLAQQLLGLVIALVVVRAERRGLFGATILRTTALIAWVVPGIAGGIIWKMLFNEAPF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGLNSLLRLVGAGPVQWLSDPNLVMWSVVLSNVWRGTAFSMVVMYAAIKAIDPVLYEAAA
CCHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VDGARADQRLRYVTLPQLKSAILVNLILITIQTLNTFDAIISLTGGGPGRVTEVLSLYTF
CCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH
NVVFRNYDLAAGAALSILMLVISLTLALIYAAFLPKGDDQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PLILVLGIFYLYPVLDVARLAFTRATLLGDDGGYTITTLINTLTRAEIPQILWVTLTFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHH
AGSVLAQQLLGLVIALVVVRAERRGLFGATILRTTALIAWVVPGIAGGIIWKMLFNEAPF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGLNSLLRLVGAGPVQWLSDPNLVMWSVVLSNVWRGTAFSMVVMYAAIKAIDPVLYEAAA
CCHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VDGARADQRLRYVTLPQLKSAILVNLILITIQTLNTFDAIISLTGGGPGRVTEVLSLYTF
CCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH
NVVFRNYDLAAGAALSILMLVISLTLALIYAAFLPKGDDQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]