Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102645

Identifier: 222102645

GI number: 222102645

Start: 268437

End: 269015

Strand: Reverse

Name: 222102645

Synonym: Avi_7301

Alternate gene names: NA

Gene position: 269015-268437 (Counterclockwise)

Preceding gene: 222102646

Following gene: 222102644

Centisome position: 42.58

GC content: 62.52

Gene sequence:

>579_bases
TTGAGCCAGTATCAACGCGCCCTCGACCCGGATGCCGCGCGCGAGGAGAGCCTTGCTGTCGAAAGTCCGGTTCGCGGCCA
GATCACACTGAAAGAGGTCAAGGCATCCGGTCCGATGGAGGCACCGGCCGATGATGGCTGGCTCGACCTGCCACTTCCTG
ACGGGTTGCCCGCTGAAACGCCGCTCAGCGAGATCGAGAAACGCCGCATGCATGGCGTGCTTTCCGGCCTGCTTGAGGCG
ATTAAGCTTGACCATCCGCAGAGCACCGCACAGTTGGACGCGCTGCTGACTGATCTGGGCAAGGCGGCAGGCGAAAGGCC
GGAAATCGAAACGGCGGGGCTGCCGCTCACGCCCTTTCAGGCAACGGATTATGATCGCTATTTCCGCGTCAACCGTCAGT
CTGCGGAAGAACCCGCTGTCGCCATGGTGCGGAGCCTCATTCAGACGGTGCGCGCCGTCACGCAGCTCTTTGCCCGCAGC
CCAGAACTTCCCGTGGTCCACGTCCGTCACCAGATGGAAGGCTTTGAAAGCCACGCGCATCTGCTTGCCCGGACCTTCGG
TTTGGAGCCGCTTCGATGA

Upstream 100 bases:

>100_bases
CCTCGACCACATTGCTGCGGTCTGGACCGACATGCGCCCGCTTTCACTCCGTCGCCAGATGGACGGCGACACGTCCGTCA
ACCGATAAGGAGGTGCAGCC

Downstream 100 bases:

>100_bases
TCGCCCTCAGCCCTCCCTCTCCCTATGCGATCTGGCGGGAGTTTCACTGGGCATTCTTCCTGAACGTTCAGGGGCTCATC
GTTTCGCTGCGCCGGTTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSQYQRALDPDAAREESLAVESPVRGQITLKEVKASGPMEAPADDGWLDLPLPDGLPAETPLSEIEKRRMHGVLSGLLEA
IKLDHPQSTAQLDALLTDLGKAAGERPEIETAGLPLTPFQATDYDRYFRVNRQSAEEPAVAMVRSLIQTVRAVTQLFARS
PELPVVHVRHQMEGFESHAHLLARTFGLEPLR

Sequences:

>Translated_192_residues
MSQYQRALDPDAAREESLAVESPVRGQITLKEVKASGPMEAPADDGWLDLPLPDGLPAETPLSEIEKRRMHGVLSGLLEA
IKLDHPQSTAQLDALLTDLGKAAGERPEIETAGLPLTPFQATDYDRYFRVNRQSAEEPAVAMVRSLIQTVRAVTQLFARS
PELPVVHVRHQMEGFESHAHLLARTFGLEPLR
>Mature_191_residues
SQYQRALDPDAAREESLAVESPVRGQITLKEVKASGPMEAPADDGWLDLPLPDGLPAETPLSEIEKRRMHGVLSGLLEAI
KLDHPQSTAQLDALLTDLGKAAGERPEIETAGLPLTPFQATDYDRYFRVNRQSAEEPAVAMVRSLIQTVRAVTQLFARSP
ELPVVHVRHQMEGFESHAHLLARTFGLEPLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21176; Mature: 21045

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYQRALDPDAAREESLAVESPVRGQITLKEVKASGPMEAPADDGWLDLPLPDGLPAET
CCCHHHHCCCCHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC
PLSEIEKRRMHGVLSGLLEAIKLDHPQSTAQLDALLTDLGKAAGERPEIETAGLPLTPFQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
ATDYDRYFRVNRQSAEEPAVAMVRSLIQTVRAVTQLFARSPELPVVHVRHQMEGFESHAH
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
LLARTFGLEPLR
HHHHHHCCCCCC
>Mature Secondary Structure 
SQYQRALDPDAAREESLAVESPVRGQITLKEVKASGPMEAPADDGWLDLPLPDGLPAET
CCHHHHCCCCHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC
PLSEIEKRRMHGVLSGLLEAIKLDHPQSTAQLDALLTDLGKAAGERPEIETAGLPLTPFQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
ATDYDRYFRVNRQSAEEPAVAMVRSLIQTVRAVTQLFARSPELPVVHVRHQMEGFESHAH
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
LLARTFGLEPLR
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA