| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102644
Identifier: 222102644
GI number: 222102644
Start: 267880
End: 268440
Strand: Reverse
Name: 222102644
Synonym: Avi_7300
Alternate gene names: NA
Gene position: 268440-267880 (Counterclockwise)
Preceding gene: 222102645
Following gene: 222102643
Centisome position: 42.49
GC content: 59.18
Gene sequence:
>561_bases ATGATCGCCCTCAGCCCTCCCTCTCCCTATGCGATCTGGCGGGAGTTTCACTGGGCATTCTTCCTGAACGTTCAGGGGCT CATCGTTTCGCTGCGCCGGTTCCAGCTGTCGGTGGAGCGCGGTCAGCTGACGTCTGCCGAACAGGAGCTTAATACCGCCT CGACACTGCTTGTCTCCTCGGCTGCGTCCATGGAACTCGCCGCGAGTTTTCCGAAAGACGTCTATGAGGCGACTGTGCGC ACCTCCATGACCCAGCCGCATGTGGAATCGGACGATTTTAGCGGCCTGATGTCGTGGGATCATGCCGTCCTGATCAGCGT CTGGCGGGATCTGCGCCCAATCTTTGAAACGCTTCCGGACGAACTCGCAAGCGCCCATTCCGCGTTTATTGCGGCCTATA AATATCTCGCTGAAAGCCATACGGGCGTCTGCTCGCGCTTCGTGGACAGCGGAAGCCTGCGGTTTGAGGATCGCAATGCT GTCGATACGCTGCGCCGTTTTGAGCGCGGACGGCTCGGCCTCATCGATCCCAAGGGCAAAGGTTGCCCGTTTCATTCCTG A
Upstream 100 bases:
>100_bases GCAGCCCAGAACTTCCCGTGGTCCACGTCCGTCACCAGATGGAAGGCTTTGAAAGCCACGCGCATCTGCTTGCCCGGACC TTCGGTTTGGAGCCGCTTCG
Downstream 100 bases:
>100_bases GCGTACCACCAGAACAGATCAAGGAACCTTGTTATGAATGACCTGTCCGCAGCCCCTCTTTCCGATGACAACAGGCATCA TATTGCCGTCATTGGCATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MIALSPPSPYAIWREFHWAFFLNVQGLIVSLRRFQLSVERGQLTSAEQELNTASTLLVSSAASMELAASFPKDVYEATVR TSMTQPHVESDDFSGLMSWDHAVLISVWRDLRPIFETLPDELASAHSAFIAAYKYLAESHTGVCSRFVDSGSLRFEDRNA VDTLRRFERGRLGLIDPKGKGCPFHS
Sequences:
>Translated_186_residues MIALSPPSPYAIWREFHWAFFLNVQGLIVSLRRFQLSVERGQLTSAEQELNTASTLLVSSAASMELAASFPKDVYEATVR TSMTQPHVESDDFSGLMSWDHAVLISVWRDLRPIFETLPDELASAHSAFIAAYKYLAESHTGVCSRFVDSGSLRFEDRNA VDTLRRFERGRLGLIDPKGKGCPFHS >Mature_186_residues MIALSPPSPYAIWREFHWAFFLNVQGLIVSLRRFQLSVERGQLTSAEQELNTASTLLVSSAASMELAASFPKDVYEATVR TSMTQPHVESDDFSGLMSWDHAVLISVWRDLRPIFETLPDELASAHSAFIAAYKYLAESHTGVCSRFVDSGSLRFEDRNA VDTLRRFERGRLGLIDPKGKGCPFHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20856; Mature: 20856
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALSPPSPYAIWREFHWAFFLNVQGLIVSLRRFQLSVERGQLTSAEQELNTASTLLVSS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AASMELAASFPKDVYEATVRTSMTQPHVESDDFSGLMSWDHAVLISVWRDLRPIFETLPD HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ELASAHSAFIAAYKYLAESHTGVCSRFVDSGSLRFEDRNAVDTLRRFERGRLGLIDPKGK HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCC GCPFHS CCCCCC >Mature Secondary Structure MIALSPPSPYAIWREFHWAFFLNVQGLIVSLRRFQLSVERGQLTSAEQELNTASTLLVSS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AASMELAASFPKDVYEATVRTSMTQPHVESDDFSGLMSWDHAVLISVWRDLRPIFETLPD HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ELASAHSAFIAAYKYLAESHTGVCSRFVDSGSLRFEDRNAVDTLRRFERGRLGLIDPKGK HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCC GCPFHS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA