Click here to switch to the map view.

The map label for this gene is 222102628

Identifier: 222102628

GI number: 222102628

Start: 238155

End: 238655

Strand: Direct

Name: 222102628

Synonym: Avi_7280

Alternate gene names: NA

Gene position: 238155-238655 (Clockwise)

Preceding gene: 222102627

Following gene: 222102629

Centisome position: 37.7

GC content: 57.09

Gene sequence:

>501_bases
ATGCTTGAGGGAAGCTTCTCGCTCACCGATCATAATGGACATGCTGTCACCGAGGCGAGTTATCGCGGCAGCTTCATGCT
GGTCTATTTCGGCTTTACCCATTGCCGCAAAGTCTGCCCGCGCTCGCTTGCCTGCATGACTGCGGCGCTGGACACATTGG
GCGAGACCCGACGTATGGTCGTGCCGCTTTACATCACCGTCGATCCGGAGCGCGATACACCGGAGAGAATGAAAGCCTTT
GTTGAAGCAAACTTTCCGCGTTTCACTGGCCTGACGGGAAGCCGCGAGGCGATCGACAGCGCGAAGGCATCCTTCCGCGT
CTTTTCCCGCAAGGGGCTCGATCCGGAAGATGCAGAAGGCTATGCCATGCCACACACGGCCTTCGCCTATCTGCTCGGGC
CTGACGGCAAATATCTGGCACATTTCATGGACACCATTGATGATCTGCAAATGGCGAACCGTCTCCGCATTCTTCTCGCT
GAAACCGAACGGGTCACCTGA

Upstream 100 bases:

>100_bases
GGTGCCGTCGGCGCCAAACGGGAGGGCGACATACTCGGACTGGAATGCGCCCTTCGCGCACCGACAAACTTTGTCTTGAC
CTTCCATTGAGGCGCTGAAC

Downstream 100 bases:

>100_bases
ACACAGGTAACAGGGTATTCAGGGTAGCGTCGGCTTAACGGCGGCCGCGGCAGGAGTGGTCACGATGGGAGCCTATGCCG
TGGTCGCAATCTCACCGACG

Product: Electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLEGSFSLTDHNGHAVTEASYRGSFMLVYFGFTHCRKVCPRSLACMTAALDTLGETRRMVVPLYITVDPERDTPERMKAF
VEANFPRFTGLTGSREAIDSAKASFRVFSRKGLDPEDAEGYAMPHTAFAYLLGPDGKYLAHFMDTIDDLQMANRLRILLA
ETERVT

Sequences:

>Translated_166_residues
MLEGSFSLTDHNGHAVTEASYRGSFMLVYFGFTHCRKVCPRSLACMTAALDTLGETRRMVVPLYITVDPERDTPERMKAF
VEANFPRFTGLTGSREAIDSAKASFRVFSRKGLDPEDAEGYAMPHTAFAYLLGPDGKYLAHFMDTIDDLQMANRLRILLA
ETERVT
>Mature_166_residues
MLEGSFSLTDHNGHAVTEASYRGSFMLVYFGFTHCRKVCPRSLACMTAALDTLGETRRMVVPLYITVDPERDTPERMKAF
VEANFPRFTGLTGSREAIDSAKASFRVFSRKGLDPEDAEGYAMPHTAFAYLLGPDGKYLAHFMDTIDDLQMANRLRILLA
ETERVT

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=144, Percent_Identity=42.3611111111111, Blast_Score=127, Evalue=6e-30,
Organism=Homo sapiens, GI281182727, Length=156, Percent_Identity=37.8205128205128, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI281182722, Length=156, Percent_Identity=37.8205128205128, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI281182716, Length=156, Percent_Identity=37.8205128205128, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI153791313, Length=156, Percent_Identity=37.8205128205128, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17531419, Length=157, Percent_Identity=28.0254777070064, Blast_Score=93, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6319498, Length=156, Percent_Identity=32.0512820512821, Blast_Score=106, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=139, Percent_Identity=33.0935251798561, Blast_Score=94, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19920710, Length=162, Percent_Identity=34.5679012345679, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 18612; Mature: 18612

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGSFSLTDHNGHAVTEASYRGSFMLVYFGFTHCRKVCPRSLACMTAALDTLGETRRMV
CCCCCEEEECCCCCEEEECCCCCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
VPLYITVDPERDTPERMKAFVEANFPRFTGLTGSREAIDSAKASFRVFSRKGLDPEDAEG
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YAMPHTAFAYLLGPDGKYLAHFMDTIDDLQMANRLRILLAETERVT
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
>Mature Secondary Structure
MLEGSFSLTDHNGHAVTEASYRGSFMLVYFGFTHCRKVCPRSLACMTAALDTLGETRRMV
CCCCCEEEECCCCCEEEECCCCCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
VPLYITVDPERDTPERMKAFVEANFPRFTGLTGSREAIDSAKASFRVFSRKGLDPEDAEG
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YAMPHTAFAYLLGPDGKYLAHFMDTIDDLQMANRLRILLAETERVT
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]