| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102629
Identifier: 222102629
GI number: 222102629
Start: 239090
End: 239491
Strand: Direct
Name: 222102629
Synonym: Avi_7281
Alternate gene names: NA
Gene position: 239090-239491 (Clockwise)
Preceding gene: 222102628
Following gene: 222102630
Centisome position: 37.84
GC content: 55.22
Gene sequence:
>402_bases TTGCTGAGTTTGACGGGACCAAAAGGTCCGTCGGATACGCAAGCAAGCGGCAACGCCGTTGTCGATCATGATATTGCGAT CACGCATGATAAGTCAGACCTTTTGGCTGCTGCTATCGGCAGTGAGACGGCGTTCCCTAGGGTGAAAACATCGATCACCC ATGCGAAGCCCGCTGCTAACGTCCATCATAGCCATTTTAGTCCGGTCATTCAGGGTGTGACCTTTGTCGGCATCAGTCTC TTTGACGGCCAACAAACTTTGTGTGCTGCGCGATCTGCACCGATCAGCCTCATTGAAATCAAGCGCGACATCGTCCGCTA CTGGGTCGCACCCCGCACGTCTTCAGGAGGCGGATTCTCCGCCCCGGTGGGTGCCCCGACCTCCGCAAAGGGAATTTATT GA
Upstream 100 bases:
>100_bases TTAACAGGAAGATGCTTATAGTGCGCCCAAATGCTCGAGGCACCACGAATTCAAGCGGAATACCATTATTAGGTCCATAA CAATCTTCGTCACCGAGCCT
Downstream 100 bases:
>100_bases TGCGCAAATTTTCTACCAGGTCTCTCGCGACAGTGCTCGCCTTGGGGTCGTTTTTCATGGTCGCCTTCGCCGCCCGAAGC CAGGATGGTGAACAAAAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MLSLTGPKGPSDTQASGNAVVDHDIAITHDKSDLLAAAIGSETAFPRVKTSITHAKPAANVHHSHFSPVIQGVTFVGISL FDGQQTLCAARSAPISLIEIKRDIVRYWVAPRTSSGGGFSAPVGAPTSAKGIY
Sequences:
>Translated_133_residues MLSLTGPKGPSDTQASGNAVVDHDIAITHDKSDLLAAAIGSETAFPRVKTSITHAKPAANVHHSHFSPVIQGVTFVGISL FDGQQTLCAARSAPISLIEIKRDIVRYWVAPRTSSGGGFSAPVGAPTSAKGIY >Mature_133_residues MLSLTGPKGPSDTQASGNAVVDHDIAITHDKSDLLAAAIGSETAFPRVKTSITHAKPAANVHHSHFSPVIQGVTFVGISL FDGQQTLCAARSAPISLIEIKRDIVRYWVAPRTSSGGGFSAPVGAPTSAKGIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13791; Mature: 13791
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSLTGPKGPSDTQASGNAVVDHDIAITHDKSDLLAAAIGSETAFPRVKTSITHAKPAAN CCCCCCCCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHCCCCCCCCHHHHCCCCCCCCC VHHSHFSPVIQGVTFVGISLFDGQQTLCAARSAPISLIEIKRDIVRYWVAPRTSSGGGFS CCCHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC APVGAPTSAKGIY CCCCCCCCCCCCC >Mature Secondary Structure MLSLTGPKGPSDTQASGNAVVDHDIAITHDKSDLLAAAIGSETAFPRVKTSITHAKPAAN CCCCCCCCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHCCCCCCCCHHHHCCCCCCCCC VHHSHFSPVIQGVTFVGISLFDGQQTLCAARSAPISLIEIKRDIVRYWVAPRTSSGGGFS CCCHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC APVGAPTSAKGIY CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA