| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102627
Identifier: 222102627
GI number: 222102627
Start: 236582
End: 238144
Strand: Direct
Name: 222102627
Synonym: Avi_7279
Alternate gene names: NA
Gene position: 236582-238144 (Clockwise)
Preceding gene: 222102625
Following gene: 222102628
Centisome position: 37.45
GC content: 57.26
Gene sequence:
>1563_bases ATGGCCATATCCGGTGAACTTCGAAAGAGTGAGCCTTTCGATGTCGCGCGCATGCCGATGCTTGACGCCGATCAGATCGG CCATTTGCGCCGCATCGAAAACCTCTCCTTGCTGCTTCCCGATGATTGGTCGGGCATGCAAGCGAAATCGACCCTACAGG AAGATTTTGGCGGGCTTCGCTTTCAGCTCGCCTATATGTCCTATGCGCTCGCCTTGACGCACAGGCATCGTCTGCCAGCG GCCCCCGGAGTCTTCCGCAAGACTTTTGAGCGACTGATTGAGAAGATTCTTTCGCCGGATGTCTGGACCTATTGGCATTA TATCAGCACCGGCAACGGTGTGATCAATGCCGCGCAGGGCGAATTGCCCGCCGAGTGGAACCCGGTCATCAAAGACAACA TCATGTACAGCGCCTATGTGCAATCGATGTCGCTTCTCTATCACTATATTTTCAATGATGACCGCTATGCGCAGCCCGGC GCGCTGACAATGGAAATCAAGACCCTTTACTGGGCAGCGGGGGGCAAGAAGTTTGTCTATGACGAGCGCTCACTCAACGA TCATCTCTACTGGATGATGGTGGAGAAGGGATATTTCGGCATCGCCTGCGAGCCGAATTGTATCTTCCAGATCTGCAACC AGGTGCCGATCCTCGGCTTCCGGTTTCATGATCTCGTGTATGGCGGATCGCTCGCGAAGGAAGTTACTGACGGCTATCAG CGCGCATGGTCCGATTTCGGCATCGCCAGTGAACGCGGCCATTTCAGGATGATGGTTCAGGAAATCGAAAGGAACCTCAT CCCCACAGAAGCGCCCTGGATCGACTTCTGGCTTGGCTCACTGATGCACGCCTGGAACCCGGAACTGGTCAAACAACACT ATCCCGGACAGATCGCAAAATGGGGTGAGGCGGGGCCGGATGGTACGCTGTGGATCAATGAAGCGCCCGGCATTCCAACC AGCCTCGGTTTTACCTCAGCACGCGATTTCGGCTGGGCGGCAGTTTGCGCGTCTGAAGTCGGCGATGATGACTCGCTTTC AAGGATGCTAGCCTATGCCGACAGGTTCCTGCATCGCTCATGGACCGACGGTGGCCTGCACTATCGCCGGCATGACGCAT CCTTCGACGATCAAGGGCTGTTCCGCGCAATGGACCCCCATACCGGCAATGCGCTTCTGGGCTATGCACGGCTCAACGTG CCGGGCGGGCTTGAGAGGCTTTACGCCGAGCCTTGGGACAAGGCCCATTTCGAGGAACCGGCGCTCGTCGAGATATCGGA CAATGCCGACGTGCTGCGTGCACGCTTCGAGCGTGACGCGAAAAGCCTGGTTCTGACGCTTGCACCGAGAGCGGATCGCG ACGGCAACGTTCTGCTGGAGCTTGGCAATATCTGGGGCCGTGGAGATTGGTCGCTTGCCGCTGACGGTGAGCATGTTCTA TCGGGCAACGCGAGCGAACTTGGCAAGCATTCAGGTGCCGTCGGCGCCAAACGGGAGGGCGACATACTCGGACTGGAATG CGCCCTTCGCGCACCGACAAACTTTGTCTTGACCTTCCATTGA
Upstream 100 bases:
>100_bases CATTCAAAAGAGTGTACTCGAATAGTTCATATTAACAAAATATGTCCAACTTCATATCGTACATGAACCATGCATTTCAA CGATTTCGGGGAGGAAATCG
Downstream 100 bases:
>100_bases GGCGCTGAACATGCTTGAGGGAAGCTTCTCGCTCACCGATCATAATGGACATGCTGTCACCGAGGCGAGTTATCGCGGCA GCTTCATGCTGGTCTATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 520; Mature: 519
Protein sequence:
>520_residues MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPA APGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPG ALTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPT SLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNV PGGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH
Sequences:
>Translated_520_residues MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPA APGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPG ALTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPT SLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNV PGGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH >Mature_519_residues AISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPAA PGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGA LTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQR AWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPTS LGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVP GGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVLS GNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58554; Mature: 58423
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLR CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCEE FQLAYMSYALALTHRHRLPAAPGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQG EEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCC ELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGALTMEIKTLYWAAGGKKFVY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEE DERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ CCCCCCCCEEEEEEECCEEEEEECCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHH RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAK HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHC WGEAGPDGTLWINEAPGIPTSLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRS CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC WTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVPGGLERLYAEPWDKAHFEEP CCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC ALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL CEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH CCCHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC >Mature Secondary Structure AISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLR CCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCEE FQLAYMSYALALTHRHRLPAAPGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQG EEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCC ELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGALTMEIKTLYWAAGGKKFVY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEE DERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ CCCCCCCCEEEEEEECCEEEEEECCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHH RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAK HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHC WGEAGPDGTLWINEAPGIPTSLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRS CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC WTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVPGGLERLYAEPWDKAHFEEP CCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC ALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL CEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH CCCHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA