Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is 222102627

Identifier: 222102627

GI number: 222102627

Start: 236582

End: 238144

Strand: Direct

Name: 222102627

Synonym: Avi_7279

Alternate gene names: NA

Gene position: 236582-238144 (Clockwise)

Preceding gene: 222102625

Following gene: 222102628

Centisome position: 37.45

GC content: 57.26

Gene sequence:

>1563_bases
ATGGCCATATCCGGTGAACTTCGAAAGAGTGAGCCTTTCGATGTCGCGCGCATGCCGATGCTTGACGCCGATCAGATCGG
CCATTTGCGCCGCATCGAAAACCTCTCCTTGCTGCTTCCCGATGATTGGTCGGGCATGCAAGCGAAATCGACCCTACAGG
AAGATTTTGGCGGGCTTCGCTTTCAGCTCGCCTATATGTCCTATGCGCTCGCCTTGACGCACAGGCATCGTCTGCCAGCG
GCCCCCGGAGTCTTCCGCAAGACTTTTGAGCGACTGATTGAGAAGATTCTTTCGCCGGATGTCTGGACCTATTGGCATTA
TATCAGCACCGGCAACGGTGTGATCAATGCCGCGCAGGGCGAATTGCCCGCCGAGTGGAACCCGGTCATCAAAGACAACA
TCATGTACAGCGCCTATGTGCAATCGATGTCGCTTCTCTATCACTATATTTTCAATGATGACCGCTATGCGCAGCCCGGC
GCGCTGACAATGGAAATCAAGACCCTTTACTGGGCAGCGGGGGGCAAGAAGTTTGTCTATGACGAGCGCTCACTCAACGA
TCATCTCTACTGGATGATGGTGGAGAAGGGATATTTCGGCATCGCCTGCGAGCCGAATTGTATCTTCCAGATCTGCAACC
AGGTGCCGATCCTCGGCTTCCGGTTTCATGATCTCGTGTATGGCGGATCGCTCGCGAAGGAAGTTACTGACGGCTATCAG
CGCGCATGGTCCGATTTCGGCATCGCCAGTGAACGCGGCCATTTCAGGATGATGGTTCAGGAAATCGAAAGGAACCTCAT
CCCCACAGAAGCGCCCTGGATCGACTTCTGGCTTGGCTCACTGATGCACGCCTGGAACCCGGAACTGGTCAAACAACACT
ATCCCGGACAGATCGCAAAATGGGGTGAGGCGGGGCCGGATGGTACGCTGTGGATCAATGAAGCGCCCGGCATTCCAACC
AGCCTCGGTTTTACCTCAGCACGCGATTTCGGCTGGGCGGCAGTTTGCGCGTCTGAAGTCGGCGATGATGACTCGCTTTC
AAGGATGCTAGCCTATGCCGACAGGTTCCTGCATCGCTCATGGACCGACGGTGGCCTGCACTATCGCCGGCATGACGCAT
CCTTCGACGATCAAGGGCTGTTCCGCGCAATGGACCCCCATACCGGCAATGCGCTTCTGGGCTATGCACGGCTCAACGTG
CCGGGCGGGCTTGAGAGGCTTTACGCCGAGCCTTGGGACAAGGCCCATTTCGAGGAACCGGCGCTCGTCGAGATATCGGA
CAATGCCGACGTGCTGCGTGCACGCTTCGAGCGTGACGCGAAAAGCCTGGTTCTGACGCTTGCACCGAGAGCGGATCGCG
ACGGCAACGTTCTGCTGGAGCTTGGCAATATCTGGGGCCGTGGAGATTGGTCGCTTGCCGCTGACGGTGAGCATGTTCTA
TCGGGCAACGCGAGCGAACTTGGCAAGCATTCAGGTGCCGTCGGCGCCAAACGGGAGGGCGACATACTCGGACTGGAATG
CGCCCTTCGCGCACCGACAAACTTTGTCTTGACCTTCCATTGA

Upstream 100 bases:

>100_bases
CATTCAAAAGAGTGTACTCGAATAGTTCATATTAACAAAATATGTCCAACTTCATATCGTACATGAACCATGCATTTCAA
CGATTTCGGGGAGGAAATCG

Downstream 100 bases:

>100_bases
GGCGCTGAACATGCTTGAGGGAAGCTTCTCGCTCACCGATCATAATGGACATGCTGTCACCGAGGCGAGTTATCGCGGCA
GCTTCATGCTGGTCTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPA
APGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPG
ALTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ
RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPT
SLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNV
PGGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL
SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH

Sequences:

>Translated_520_residues
MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPA
APGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPG
ALTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ
RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPT
SLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNV
PGGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL
SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH
>Mature_519_residues
AISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLRFQLAYMSYALALTHRHRLPAA
PGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQGELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGA
LTMEIKTLYWAAGGKKFVYDERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQR
AWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAKWGEAGPDGTLWINEAPGIPTS
LGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRSWTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVP
GGLERLYAEPWDKAHFEEPALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVLS
GNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58554; Mature: 58423

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLR
CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCEE
FQLAYMSYALALTHRHRLPAAPGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQG
EEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCC
ELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGALTMEIKTLYWAAGGKKFVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEE
DERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ
CCCCCCCCEEEEEEECCEEEEEECCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHH
RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAK
HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHC
WGEAGPDGTLWINEAPGIPTSLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRS
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
WTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVPGGLERLYAEPWDKAHFEEP
CCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC
ALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL
CEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE
SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH
CCCHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC
>Mature Secondary Structure 
AISGELRKSEPFDVARMPMLDADQIGHLRRIENLSLLLPDDWSGMQAKSTLQEDFGGLR
CCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCEE
FQLAYMSYALALTHRHRLPAAPGVFRKTFERLIEKILSPDVWTYWHYISTGNGVINAAQG
EEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCC
ELPAEWNPVIKDNIMYSAYVQSMSLLYHYIFNDDRYAQPGALTMEIKTLYWAAGGKKFVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEE
DERSLNDHLYWMMVEKGYFGIACEPNCIFQICNQVPILGFRFHDLVYGGSLAKEVTDGYQ
CCCCCCCCEEEEEEECCEEEEEECCHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHH
RAWSDFGIASERGHFRMMVQEIERNLIPTEAPWIDFWLGSLMHAWNPELVKQHYPGQIAK
HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHC
WGEAGPDGTLWINEAPGIPTSLGFTSARDFGWAAVCASEVGDDDSLSRMLAYADRFLHRS
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
WTDGGLHYRRHDASFDDQGLFRAMDPHTGNALLGYARLNVPGGLERLYAEPWDKAHFEEP
CCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC
ALVEISDNADVLRARFERDAKSLVLTLAPRADRDGNVLLELGNIWGRGDWSLAADGEHVL
CEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE
SGNASELGKHSGAVGAKREGDILGLECALRAPTNFVLTFH
CCCHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA