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The map label for this gene is scpB [H]

Identifier: 222102625

GI number: 222102625

Start: 235067

End: 235753

Strand: Direct

Name: scpB [H]

Synonym: Avi_7277

Alternate gene names: 222102625

Gene position: 235067-235753 (Clockwise)

Preceding gene: 222102624

Following gene: 222102627

Centisome position: 37.21

GC content: 61.43

Gene sequence:

>687_bases
ATGGCCGGAGCCCCTGTAGCCAAGCAATCCCGTAAGGAAAGGGCGAGTGCCGCAGCCGAACGGCTGTTTGATCGGGAGCT
GGAGGATCTGCCGCCGGAACTGCGCTGGCGGGAATGGATGCTGAGGGTCGAAGCGGTGATCTTTGCCTCTGCCGAGCCAG
TCGGTCGCGAGACATTGGCGCGGGTGGTGGGAAAAGAGTGCAGCATCGATCTGCTGATCGACGACCTCATCGAGGAGCTT
CGTTCCCGACCCTACGAACTGGTTTCGGTGGCCGGTGGTTGGCAACACAGAACTCGGGTGCGGTTCGCGGAGACGATACG
CGCCTCAACTGCTCCGACGCGCGGCGCGGCAACGAAGTTGTCGCAGTTCGAGGCGATGGTGCTGATGGCGGTGGGATATT
TCCAGCCGGTCACCCGGGCGGAACTGAGTAAGATCTTCGGCAAGGAGGTCAACCGCGATACAATTGCTTCGCTTCGGGGC
GCTGGGTTCATAGCCTCGGGGCCACGCAGCCCGACACCAGGTGCGCCCTATACCTACGTCACCACCAAACACTTCCTGTC
CGCCTTCGATATGGAGACCCTTCGTGATCTGCCCGACATCGAAGCGCTTGAGGATGCCGGGCTGTTGAGTAGAAATGCTG
TGCGCGAGGGACCGATTGCAGGCGAGCCAGAGAGCGACGAAGAATAG

Upstream 100 bases:

>100_bases
CCCGCTGGGCGGCCAACCGGCTGTTCGAGCGGCTGGAAAGCTTTGAGGCGGTACGCGAACTGTCCGGCCGCTCCTCTTTC
CGGGTGTTTGGAGTTTGACG

Downstream 100 bases:

>100_bases
GGACGGCGCAGAGGTATTCGGTTGTCGGTCGCTATATGGATTAAGCCGCCGCTACTCCAACGCCTGTTCTTGTGGCAGAT
CCCATAATCCTATTGGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAGAPVAKQSRKERASAAAERLFDRELEDLPPELRWREWMLRVEAVIFASAEPVGRETLARVVGKECSIDLLIDDLIEEL
RSRPYELVSVAGGWQHRTRVRFAETIRASTAPTRGAATKLSQFEAMVLMAVGYFQPVTRAELSKIFGKEVNRDTIASLRG
AGFIASGPRSPTPGAPYTYVTTKHFLSAFDMETLRDLPDIEALEDAGLLSRNAVREGPIAGEPESDEE

Sequences:

>Translated_228_residues
MAGAPVAKQSRKERASAAAERLFDRELEDLPPELRWREWMLRVEAVIFASAEPVGRETLARVVGKECSIDLLIDDLIEEL
RSRPYELVSVAGGWQHRTRVRFAETIRASTAPTRGAATKLSQFEAMVLMAVGYFQPVTRAELSKIFGKEVNRDTIASLRG
AGFIASGPRSPTPGAPYTYVTTKHFLSAFDMETLRDLPDIEALEDAGLLSRNAVREGPIAGEPESDEE
>Mature_227_residues
AGAPVAKQSRKERASAAAERLFDRELEDLPPELRWREWMLRVEAVIFASAEPVGRETLARVVGKECSIDLLIDDLIEELR
SRPYELVSVAGGWQHRTRVRFAETIRASTAPTRGAATKLSQFEAMVLMAVGYFQPVTRAELSKIFGKEVNRDTIASLRGA
GFIASGPRSPTPGAPYTYVTTKHFLSAFDMETLRDLPDIEALEDAGLLSRNAVREGPIAGEPESDEE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25204; Mature: 25073

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGAPVAKQSRKERASAAAERLFDRELEDLPPELRWREWMLRVEAVIFASAEPVGRETLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RVVGKECSIDLLIDDLIEELRSRPYELVSVAGGWQHRTRVRFAETIRASTAPTRGAATKL
HHHCCCCCHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
SQFEAMVLMAVGYFQPVTRAELSKIFGKEVNRDTIASLRGAGFIASGPRSPTPGAPYTYV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEH
TTKHFLSAFDMETLRDLPDIEALEDAGLLSRNAVREGPIAGEPESDEE
HHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGAPVAKQSRKERASAAAERLFDRELEDLPPELRWREWMLRVEAVIFASAEPVGRETLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RVVGKECSIDLLIDDLIEELRSRPYELVSVAGGWQHRTRVRFAETIRASTAPTRGAATKL
HHHCCCCCHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
SQFEAMVLMAVGYFQPVTRAELSKIFGKEVNRDTIASLRGAGFIASGPRSPTPGAPYTYV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEH
TTKHFLSAFDMETLRDLPDIEALEDAGLLSRNAVREGPIAGEPESDEE
HHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]