Click here to switch to the map view.

The map label for this gene is 222102621

Identifier: 222102621

GI number: 222102621

Start: 229181

End: 230149

Strand: Direct

Name: 222102621

Synonym: Avi_7273

Alternate gene names: NA

Gene position: 229181-230149 (Clockwise)

Preceding gene: 222102612

Following gene: 222102622

Centisome position: 36.28

GC content: 54.59

Gene sequence:

>969_bases
ATGGGTGCCAGAGGCTTCCTCTATTACCGGCCAGACGGGCGGCGGATTACCCAGGCTGATGAGATTGCTCGCCTGAACTC
TCTGGCAATACCGCCCGCCTACACAGACGTCGTCATCTCGACGAATCCCTTCTCACACCTGCAGGCAATCGGCACGGATG
CCAAGGGTCGTCGGCAATACCGCTATCATAAAGACTGGCACGCCGAGCGAGGCAAGGCCAAGTTCGAACGGCTGGCCGAT
TTCGCGTCCAGACTTCCTGACCTGCGCGAACGGGTCGACATCGACCTTCGTTCGCGTGGCCTCAATGTCGAAAAGGCGCT
GGCAACGGTCGTATGGATGCTCGATAACCTCTATATCAGAATAGGGAACGCTGCCTATGCAGAGACGAACAAGTCGTTCG
GCCTTACCACGTTGCGCAGTCGTCACGTGAGCGTCGAAGGCGGCAGTCTCAAATTTCGGTTCAAAGGTAAATCCGGCAAG
GAATGGAATCTTGCCCATAGTGACCGGCGGATCGCCAATGTCGTGCGAAAACTACAGGAACTTCCAGGACAACACCTCTT
TCAATACGTTTGCGATCAAGGCGGATGCAGACCCATCTCCTCACATGATGTGAATGCCTATATCCGAGAGATGACAGGTG
ACGATTTCAGTTCACGCCAGTTCAGAACGTGGGGCGCAACCTGCATGGCAGTGGATGCACTGGCTTCTGCCGAGGCCGCC
ACGACCAAGCGCGAGTTGGCCCGTCAACTCAATGCAGCGATTGACGCAGTCGCTGCGAAACTGGTCAATACCCGATCGGT
CTGTCGGTCTTCCTACATACATCCCGCCGTGTTCGAAGACTTCCAAGCGGGTACGCTTCGTGATGTCCTTAAGTTGAAAA
CCACGAGTGAACGACTTCTTCAATGGATGGATGAAGGCGAGATCCAAGTGCTAAAATGGCTGAAGAAACAAACAGTATCC
AATAGCTAG

Upstream 100 bases:

>100_bases
GAACCAGATCGTCACCGAAATCGATGCAAACGCCACCGAGGCCAAACTCACCTCCGGGCTAGTCTACGGTCCTGGTTTGG
AGACCGGGATCACCCGGAAG

Downstream 100 bases:

>100_bases
CCTAACGCTGCTTACGTCAGATCGGTTGTGCACCGTGACCGATCACTCCAAATCATCGAAGATGATCTCCCGATGGAAGA
TGGAGGATTTCATTAACCAA

Product: DNA topoisomerase

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MGARGFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDAKGRRQYRYHKDWHAERGKAKFERLAD
FASRLPDLRERVDIDLRSRGLNVEKALATVVWMLDNLYIRIGNAAYAETNKSFGLTTLRSRHVSVEGGSLKFRFKGKSGK
EWNLAHSDRRIANVVRKLQELPGQHLFQYVCDQGGCRPISSHDVNAYIREMTGDDFSSRQFRTWGATCMAVDALASAEAA
TTKRELARQLNAAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQAGTLRDVLKLKTTSERLLQWMDEGEIQVLKWLKKQTVS
NS

Sequences:

>Translated_322_residues
MGARGFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDAKGRRQYRYHKDWHAERGKAKFERLAD
FASRLPDLRERVDIDLRSRGLNVEKALATVVWMLDNLYIRIGNAAYAETNKSFGLTTLRSRHVSVEGGSLKFRFKGKSGK
EWNLAHSDRRIANVVRKLQELPGQHLFQYVCDQGGCRPISSHDVNAYIREMTGDDFSSRQFRTWGATCMAVDALASAEAA
TTKRELARQLNAAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQAGTLRDVLKLKTTSERLLQWMDEGEIQVLKWLKKQTVS
NS
>Mature_321_residues
GARGFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDAKGRRQYRYHKDWHAERGKAKFERLADF
ASRLPDLRERVDIDLRSRGLNVEKALATVVWMLDNLYIRIGNAAYAETNKSFGLTTLRSRHVSVEGGSLKFRFKGKSGKE
WNLAHSDRRIANVVRKLQELPGQHLFQYVCDQGGCRPISSHDVNAYIREMTGDDFSSRQFRTWGATCMAVDALASAEAAT
TKRELARQLNAAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQAGTLRDVLKLKTTSERLLQWMDEGEIQVLKWLKKQTVSN
S

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36439; Mature: 36308

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGARGFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDAKGRRQY
CCCCCEEEECCCCCEECHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCC
RYHKDWHAERGKAKFERLADFASRLPDLRERVDIDLRSRGLNVEKALATVVWMLDNLYIR
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHEEE
IGNAAYAETNKSFGLTTLRSRHVSVEGGSLKFRFKGKSGKEWNLAHSDRRIANVVRKLQE
ECCCHHHCCCCCCCCHHHHHCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LPGQHLFQYVCDQGGCRPISSHDVNAYIREMTGDDFSSRQFRTWGATCMAVDALASAEAA
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHH
TTKRELARQLNAAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQAGTLRDVLKLKTTSERLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
QWMDEGEIQVLKWLKKQTVSNS
HHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GARGFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDAKGRRQY
CCCCEEEECCCCCEECHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCC
RYHKDWHAERGKAKFERLADFASRLPDLRERVDIDLRSRGLNVEKALATVVWMLDNLYIR
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHEEE
IGNAAYAETNKSFGLTTLRSRHVSVEGGSLKFRFKGKSGKEWNLAHSDRRIANVVRKLQE
ECCCHHHCCCCCCCCHHHHHCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LPGQHLFQYVCDQGGCRPISSHDVNAYIREMTGDDFSSRQFRTWGATCMAVDALASAEAA
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHH
TTKRELARQLNAAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQAGTLRDVLKLKTTSERLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
QWMDEGEIQVLKWLKKQTVSNS
HHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA